Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HV033_RS01560 Genome accession   NZ_CP058191
Coordinates   326230..326754 (+) Length   174 a.a.
NCBI ID   WP_003860284.1    Uniprot ID   A0A9Q2WCG9
Organism   Enterobacter hormaechei strain RHBSTW-00012     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 315924..348617 326230..326754 within 0


Gene organization within MGE regions


Location: 315924..348617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV033_RS01515 (HV033_01515) dnaB 315924..317336 (+) 1413 WP_003860298.1 replicative DNA helicase -
  HV033_RS01520 (HV033_01520) alr 317353..318432 (+) 1080 WP_058677312.1 alanine racemase -
  HV033_RS01525 (HV033_01525) pnuC 318454..319011 (+) 558 WP_032627030.1 nicotinamide riboside transporter PnuC -
  HV033_RS01530 (HV033_01530) - 319008..320021 (+) 1014 WP_063147064.1 AAA family ATPase -
  HV033_RS01535 (HV033_01535) tyrB 320093..321286 (+) 1194 WP_023305262.1 aromatic amino acid transaminase -
  HV033_RS01540 (HV033_01540) aphA 321554..322267 (+) 714 WP_063147065.1 acid phosphatase AphA -
  HV033_RS01545 (HV033_01545) - 322380..322796 (+) 417 WP_023299095.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HV033_RS01550 (HV033_01550) - 322799..323152 (+) 354 WP_006810472.1 MmcQ/YjbR family DNA-binding protein -
  HV033_RS01555 (HV033_01555) uvrA 323156..325978 (-) 2823 WP_003860287.1 excinuclease ABC subunit UvrA -
  HV033_RS01560 (HV033_01560) ssb 326230..326754 (+) 525 WP_003860284.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HV033_RS01565 (HV033_01565) - 326898..328145 (+) 1248 WP_057992044.1 site-specific integrase -
  HV033_RS01570 (HV033_01570) - 328138..329682 (+) 1545 WP_053065658.1 site-specific integrase -
  HV033_RS01575 (HV033_01575) - 329682..331706 (+) 2025 WP_044650468.1 integrase -
  HV033_RS01580 (HV033_01580) - 331699..332103 (+) 405 WP_046877732.1 hypothetical protein -
  HV033_RS01585 (HV033_01585) - 332249..332812 (-) 564 Protein_304 IS5-like element IS903 family transposase -
  HV033_RS01595 (HV033_01595) - 334391..334723 (+) 333 WP_044650496.1 hypothetical protein -
  HV033_RS01600 (HV033_01600) - 334720..335961 (+) 1242 WP_077257501.1 PfkB family carbohydrate kinase -
  HV033_RS01605 (HV033_01605) - 335958..336563 (+) 606 WP_046877730.1 7-cyano-7-deazaguanine synthase -
  HV033_RS01610 (HV033_01610) - 336541..337215 (+) 675 WP_249415671.1 dehydrogenase -
  HV033_RS01615 (HV033_01615) - 337159..338004 (-) 846 WP_044650562.1 8-oxoguanine DNA glycosylase -
  HV033_RS01620 (HV033_01620) - 338001..338567 (-) 567 WP_077258260.1 DNA adenine methylase -
  HV033_RS01625 (HV033_01625) - 339094..340458 (+) 1365 WP_046877729.1 anti-phage deoxyguanosine triphosphatase -
  HV033_RS01630 (HV033_01630) - 341109..341354 (+) 246 WP_044652526.1 hypothetical protein -
  HV033_RS01640 (HV033_01640) - 342736..343620 (+) 885 WP_072060504.1 hypothetical protein -
  HV033_RS01645 (HV033_01645) - 343734..346334 (+) 2601 WP_046876814.1 DEAD/DEAH box helicase -
  HV033_RS01650 (HV033_01650) - 347014..348051 (+) 1038 WP_227545489.1 IS5 family transposase -
  HV033_RS01655 (HV033_01655) - 348336..348617 (-) 282 WP_022646751.1 YjcB family protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18650.66 Da        Isoelectric Point: 5.2456

>NTDB_id=462556 HV033_RS01560 WP_003860284.1 326230..326754(+) (ssb) [Enterobacter hormaechei strain RHBSTW-00012]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=462556 HV033_RS01560 WP_003860284.1 326230..326754(+) (ssb) [Enterobacter hormaechei strain RHBSTW-00012]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCTGAAGTGGCCGGTGAGTATCTGCGTAAGGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTCAACGTAGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAACAGCCTCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCACAGCAGCAGTCTGCTCCGGCACCG
TCTAACGAACCGCCAATGGACTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.793
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374