Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HV047_RS24050 Genome accession   NZ_CP058172
Coordinates   4890145..4891665 (+) Length   506 a.a.
NCBI ID   WP_032626968.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain RHBSTW-00056     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4885145..4896665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV047_RS24030 (HV047_24040) ilvE 4886712..4887641 (-) 930 WP_155025879.1 branched-chain-amino-acid transaminase -
  HV047_RS24035 (HV047_24045) ilvM 4887660..4887923 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  HV047_RS24040 (HV047_24050) ilvG 4887920..4889566 (-) 1647 WP_045308986.1 acetolactate synthase 2 catalytic subunit -
  HV047_RS25280 ilvX 4889569..4889619 (-) 51 WP_166792073.1 peptide IlvX -
  HV047_RS24045 (HV047_24055) ilvL 4889706..4889804 (-) 99 WP_001311244.1 ilv operon leader peptide -
  HV047_RS24050 (HV047_24060) comM 4890145..4891665 (+) 1521 WP_032626968.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HV047_RS24055 (HV047_24065) - 4891692..4892030 (-) 339 WP_006808641.1 DUF413 domain-containing protein -
  HV047_RS24060 (HV047_24070) hdfR 4892149..4892970 (+) 822 WP_022649779.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54704.68 Da        Isoelectric Point: 7.3360

>NTDB_id=462481 HV047_RS24050 WP_032626968.1 4890145..4891665(+) (comM) [Enterobacter hormaechei strain RHBSTW-00056]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYAFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTPGLSSCEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAWLEGRHELAEPQENEEVVADSPDDLSDIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIFSLVSSISLHKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHLSRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLSKLSGPFLDRFDLSLEIPLPPPGLLRQTGIKG
ESSAAVRERVIAAQARQYARQNRLNARLDNSGIRQFCSLNAEDAGWLEETLTRFGLSIRAWQRLLKVARTVADVEGCPGI
ERRHLQEALSYRAIDRLLLHLQKMLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=462481 HV047_RS24050 WP_032626968.1 4890145..4891665(+) (comM) [Enterobacter hormaechei strain RHBSTW-00056]
ATGTCACTGTCAGTTGTTTATACACGCGCGGCCATCGGCGTGAAGGCACCGCTTATTTCTGTAGAGGTTCATTTAAGTAA
TGGACTGCCCGGACTGACGCTGGTCGGCTTACCCGAAACGACCGTTAAGGAGGCCAGGGATCGCGTGCGCAGCGCAATTA
TTAATAGCGGTTATGCTTTTCCGGCGAAGAAGATCACCATCAACCTTGCGCCCGCCGATTTGCCAAAGGAGGGAGGGCGA
TATGATTTACCTATTGCTATAGCGCTTCTCGCGGCTTCTGAACAGCTCAATACGCCAGGGTTAAGCTCGTGCGAGTTCGT
GGGTGAATTAGCGCTTACAGGCGCGTTAAGAGGCGTTCCCGGAGCAATCTCGGGTGCGCTTGAAGCCATACGCGCGGGAA
GGCAAATCATTGTGGCCAATGAAAATGCATCTGAAGTCAGCCTTATCGCCGAAAAGGGGTGTCTTGTCGCGGGACATTTG
CAGGAGGTTTGCGCCTGGCTGGAAGGCCGACACGAGCTTGCCGAGCCGCAGGAGAATGAGGAGGTAGTGGCAGATTCTCC
CGATGACCTCAGCGATATTATGGGTCAGGAACAGGGTAAGCGGGCGTTAGAAATAACGGCCGCGGGTGGGCATAACCTGC
TACTGATAGGTCCACCAGGCACGGGGAAAACGATGCTGGCGAGCAGGTTGAGCGGCCTGCTGCCCCCCCTCAATAATCAC
GAAGCGCTGGAAAGCGCCGCGATATTTAGCCTGGTCAGTTCAATATCGCTGCATAAACAGTGGCGCCGCCGTCCTTTCCG
CTCGCCACACCACAGTGCGTCTCTTACCGCGATGGTGGGCGGGGGCTCAATTCCCGGACCGGGTGAAATCTCACTGGCAC
ACAACGGCATTCTGTTCCTGGATGAATTGCCAGAGTTTGAACGCCGCGTGCTGGATGCGTTGCGGGAGCCGATTGAATCC
GGCGAAATCCATCTGTCTCGTACACGCGCCAAAATAAGCTACCCTGCGCAGTTTCAGCTGGTCGCCGCGATGAACCCTAG
CCCAACGGGCCATTATCAGGGCAACCATAACCGCTGTACGCCGGAGCAGACGCTGCGCTATCTGAGTAAGCTGTCCGGCC
CCTTCCTCGACCGTTTTGATTTATCTCTCGAGATCCCCCTGCCACCGCCCGGTCTGTTGAGGCAAACCGGTATCAAAGGC
GAAAGCTCAGCAGCGGTGCGAGAACGGGTTATTGCGGCTCAGGCGCGGCAGTATGCCCGTCAGAACAGGCTGAATGCCCG
GCTGGATAACAGCGGGATCCGACAGTTTTGCTCTCTCAACGCCGAAGATGCAGGCTGGCTGGAAGAGACACTGACGCGGT
TTGGGCTATCCATTCGCGCGTGGCAGCGTTTGTTGAAAGTTGCGCGCACGGTCGCTGACGTGGAGGGCTGCCCCGGAATA
GAGAGGCGACATTTGCAGGAGGCATTAAGCTACCGTGCGATCGATCGGCTGCTGTTGCATCTGCAAAAAATGCTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.939

100

0.593
  comM Glaesserella parasuis strain SC1401

58.383

100

0.585
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Vibrio campbellii strain DS40M4

58.648

99.407

0.583
  comM Legionella pneumophila str. Paris

49.698

98.221

0.488
  comM Legionella pneumophila strain ERS1305867

49.698

98.221

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.393

100

0.435