Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HVX63_RS21165 Genome accession   NZ_CP057632
Coordinates   4418386..4418913 (-) Length   175 a.a.
NCBI ID   WP_042999045.1    Uniprot ID   -
Organism   Citrobacter sp. RHB20-C15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 4417877..4418179 4418386..4418913 flank 207


Gene organization within MGE regions


Location: 4417877..4418913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HVX63_RS21160 (HVX63_21175) tnpA 4417916..4418179 (-) 264 Protein_4164 IS200/IS605 family transposase -
  HVX63_RS21165 (HVX63_21180) ssb 4418386..4418913 (-) 528 WP_042999045.1 single-stranded DNA-binding protein SSB1 Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18877.92 Da        Isoelectric Point: 5.2456

>NTDB_id=462032 HVX63_RS21165 WP_042999045.1 4418386..4418913(-) (ssb) [Citrobacter sp. RHB20-C15]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGQQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=462032 HVX63_RS21165 WP_042999045.1 4418386..4418913(-) (ssb) [Citrobacter sp. RHB20-C15]
ATGGCCAGCAGAGGCGTAAATAAGGTTATTCTCGTGGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAATGG
TGGCGCAGTTGCCAACATCACGCTGGCTACTTCCGAATCCTGGCGTGACAAGCAGACCGGTGAAATGAAAGAGCAGACAG
AATGGCACCGTGTTGTGCTGTTCGGCAAACTGGCGGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTCTACATT
GAAGGTCAGTTGCGTACCCGTAAATGGACCGATCAGTCCGGCGTAGAGAAATACACCACGGAAGTGGTGGTGAACGTTGG
CGGTACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCACCGGCAGGCGGTCAGCAGCAACAGGGTGGTTGGGGTC
AACCTCAGCAGCCACAGGGTGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCTGCCCCGGCAGCA
CCGTCTAATGAACCACCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.481

100

0.76
  ssb Glaesserella parasuis strain SC1401

57.065

100

0.6
  ssb Neisseria meningitidis MC58

46.995

100

0.491
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.491
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.667

100

0.377