Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HVX68_RS21835 Genome accession   NZ_CP057620
Coordinates   4600506..4602026 (+) Length   506 a.a.
NCBI ID   WP_181822276.1    Uniprot ID   -
Organism   Citrobacter sp. RHB21-C01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4595506..4607026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HVX68_RS21815 (HVX68_21820) ilvE 4597061..4597990 (-) 930 WP_042292843.1 branched-chain-amino-acid transaminase -
  HVX68_RS21820 (HVX68_21825) ilvM 4598010..4598273 (-) 264 WP_042292846.1 acetolactate synthase 2 small subunit -
  HVX68_RS21825 (HVX68_21830) ilvG 4598270..4599916 (-) 1647 WP_181822275.1 acetolactate synthase 2 catalytic subunit -
  HVX68_RS21830 (HVX68_21835) ilvL 4600056..4600154 (-) 99 WP_001311244.1 ilv operon leader peptide -
  HVX68_RS21835 (HVX68_21840) comM 4600506..4602026 (+) 1521 WP_181822276.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HVX68_RS21840 (HVX68_21845) maoP 4602052..4602390 (-) 339 WP_042292859.1 macrodomain Ori organization protein MaoP -
  HVX68_RS21845 (HVX68_21850) hdfR 4602509..4603342 (+) 834 WP_060569256.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54996.92 Da        Isoelectric Point: 7.6533

>NTDB_id=461989 HVX68_RS21835 WP_181822276.1 4600506..4602026(+) (comM) [Citrobacter sp. RHB21-C01]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTLVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLVASEQLKTHRLDQYELVGELALTGALRGVPGAISSATEAIRAGRSIIVAKENEDEVGLIDGDGCLIADHL
QAVCAFLEGKQPLDPPSPGVWGSSPNHDDLNDIIGQEQGKRSLEITAAGGHNLLLIGPPGTGKTMLASRLNGLLPPLSNK
EALESAAILSLVNSTSVQKQWKQRPFRSPHHSASLAAMVGGGSIPGPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKIAYPARFQLVAAMNPSPTGHYQGKHNRCTPEQTLRYLGRLSGPFLDRFDLSLEIPLLPAGMLSQTEVKG
ESSATVKQRVIAAQERQYRRQGKLNAHLQNKEIRQHCPLNNEDSQWLEETLIHLGLSIRAWQRLLKVSRTIADLEQAEGI
TRQHLQEAVSYRAIDRLLAHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=461989 HVX68_RS21835 WP_181822276.1 4600506..4602026(+) (comM) [Citrobacter sp. RHB21-C01]
ATGTCACTGTCAATTGTTCATACGCGAGCTGCGCTCGGCGTTAACGCGCCGGCTATCACAATCGAAGTCCATATCAGTAA
CGGACTCCCAGGCCTGACGCTGGTGGGGCTACCGGAAACCACCGTAAAGGAGGCCCGGGATCGGGTTCGTAGCGCTATTA
TCAATAGCGGGTATGAATTCCCGGCTAAGAAAATCACGATTAATCTTGCCCCTGCCGATCTCCCCAAGGAGGGAGGGCGA
TATGATTTACCTATCGCCGTTGCGCTTCTGGTGGCTTCTGAGCAGCTTAAGACCCATAGGCTTGATCAATATGAGTTAGT
GGGCGAATTAGCGCTTACAGGCGCGCTACGTGGCGTTCCTGGCGCCATCTCCAGCGCAACCGAAGCGATACGCGCAGGAA
GAAGTATCATCGTTGCAAAAGAGAATGAAGACGAAGTAGGACTGATTGACGGCGATGGCTGTCTGATAGCCGACCATCTG
CAGGCAGTCTGCGCATTTCTGGAAGGCAAGCAGCCGCTCGATCCCCCTTCCCCGGGCGTATGGGGTTCTTCGCCCAATCA
CGACGATCTCAACGATATTATTGGCCAGGAGCAAGGTAAGCGCAGCCTGGAGATTACGGCGGCAGGTGGACACAACCTGC
TTCTTATTGGCCCTCCGGGCACCGGTAAAACAATGCTTGCCAGTCGGCTTAATGGATTACTACCACCTCTAAGTAACAAA
GAGGCGCTGGAAAGCGCGGCAATCCTTAGCCTGGTTAATTCGACCAGTGTGCAAAAGCAGTGGAAACAGCGCCCCTTTCG
ATCGCCACATCACAGCGCATCCCTGGCGGCAATGGTCGGTGGCGGCTCCATTCCCGGACCCGGTGAAATTTCTCTGGCGC
ATAACGGCATACTTTTTCTCGATGAACTCCCCGAATTCGAACGACGCACATTAGATGCGTTACGTGAGCCGATAGAGTCC
GGGCAAATTCACCTTTCGCGCACGCGGGCTAAGATCGCCTATCCGGCGCGTTTTCAATTGGTTGCGGCAATGAACCCCAG
CCCTACCGGACATTATCAGGGAAAACACAATCGATGTACGCCAGAACAAACACTGCGCTATCTTGGCCGGCTGTCCGGAC
CGTTTCTCGACCGCTTCGATCTTTCGTTGGAGATCCCGTTGCTACCTGCAGGTATGCTCAGTCAGACCGAAGTCAAAGGT
GAAAGTAGCGCTACGGTTAAGCAGCGGGTCATCGCTGCGCAGGAACGGCAGTACAGGCGCCAGGGTAAACTCAACGCACA
TTTGCAAAATAAAGAAATTCGTCAGCATTGCCCATTGAACAACGAGGATTCGCAGTGGCTGGAAGAAACGCTCATCCATC
TGGGGTTGTCTATCAGGGCGTGGCAACGTTTGTTGAAGGTTTCCCGGACCATTGCCGATCTCGAACAGGCGGAAGGGATC
ACTCGCCAGCATTTACAGGAAGCAGTGAGCTACCGGGCCATAGACAGGTTACTTGCTCATCTGCAGAAACTCCTGACGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-388)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

60.04

99.407

0.597
  comM Haemophilus influenzae Rd KW20

59.136

100

0.595
  comM Glaesserella parasuis strain SC1401

58.383

100

0.585
  comM Vibrio campbellii strain DS40M4

58.367

99.209

0.579
  comM Legionella pneumophila str. Paris

46.988

98.419

0.462
  comM Legionella pneumophila strain ERS1305867

46.988

98.419

0.462
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.96

99.802

0.439