Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HVX68_RS20380 Genome accession   NZ_CP057620
Coordinates   4279403..4279927 (-) Length   174 a.a.
NCBI ID   WP_042291190.1    Uniprot ID   -
Organism   Citrobacter sp. RHB21-C01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4274403..4284927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HVX68_RS20375 (HVX68_20380) - 4276629..4279340 (+) 2712 WP_181823305.1 cation-transporting P-type ATPase -
  HVX68_RS20380 (HVX68_20385) ssb 4279403..4279927 (-) 525 WP_042291190.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HVX68_RS20385 (HVX68_20390) uvrA 4280182..4283004 (+) 2823 WP_181822181.1 excinuclease ABC subunit UvrA -
  HVX68_RS20390 (HVX68_20395) - 4283047..4283403 (-) 357 WP_042291198.1 MmcQ/YjbR family DNA-binding protein -
  HVX68_RS20395 (HVX68_20400) - 4283406..4283822 (-) 417 WP_060570401.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HVX68_RS20400 (HVX68_20405) aphA 4283931..4284644 (-) 714 WP_060570402.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18821.81 Da        Isoelectric Point: 5.2358

>NTDB_id=461986 HVX68_RS20380 WP_042291190.1 4279403..4279927(-) (ssb) [Citrobacter sp. RHB21-C01]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDKYTTEVVVNVGGTMQMLGGRQGGGAPAGGQQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=461986 HVX68_RS20380 WP_042291190.1 4279403..4279927(-) (ssb) [Citrobacter sp. RHB21-C01]
ATGGCCAGCAGAGGCGTAAATAAGGTTATTCTCGTGGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAACAGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGTGTGGTGCTGTTCGGTAAGTTGGCGGAAGTGGCCAGCGAATATCTGCGTAAAGGCTCTCAGGTATACATC
GAAGGTCAACTGCGTACCCGTAAATGGACCGATCAGTCCGGTCAGGACAAATACACCACGGAAGTTGTGGTTAACGTGGG
CGGCACCATGCAAATGCTGGGTGGCCGTCAGGGCGGCGGCGCGCCGGCAGGCGGTCAGCAGCAGCAGGGCGGTTGGGGTC
AGCCGCAGCAGCCTCAGGGCGGCAACCAGTTCAGCGGCGGCGCACAGTCTCGTCCGCAGCAGCAGTCTGCACCGGCACCG
TCTAACGAACCGCCAATGGACTTTGACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75

100

0.776
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

45.304

100

0.471
  ssb Neisseria gonorrhoeae MS11

46.067

100

0.471
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.222

100

0.385