Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HVX92_RS21385 Genome accession   NZ_CP057561
Coordinates   4479121..4480641 (+) Length   506 a.a.
NCBI ID   WP_148047797.1    Uniprot ID   -
Organism   Escherichia fergusonii strain RHB23-C02     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4474121..4485641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HVX92_RS21360 (HVX92_21330) ilvE 4475675..4476604 (-) 930 WP_181812060.1 branched-chain-amino-acid transaminase -
  HVX92_RS21365 (HVX92_21335) ilvM 4476624..4476887 (-) 264 WP_000983255.1 acetolactate synthase 2 small subunit -
  HVX92_RS21370 (HVX92_21340) ilvG 4476884..4478530 (-) 1647 WP_181812061.1 acetolactate synthase 2 catalytic subunit -
  HVX92_RS21375 (HVX92_21345) ilvX 4478533..4478583 (-) 51 WP_001387183.1 peptide IlvX -
  HVX92_RS21380 (HVX92_21350) ilvL 4478670..4478768 (-) 99 WP_001311244.1 ilv operon leader peptide -
  HVX92_RS21385 (HVX92_21355) comM 4479121..4480641 (+) 1521 WP_148047797.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HVX92_RS21390 (HVX92_21360) maoP 4480666..4481004 (-) 339 WP_000841001.1 macrodomain Ori organization protein MaoP -
  HVX92_RS21395 (HVX92_21365) hdfR 4481123..4481962 (+) 840 WP_000379253.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55140.33 Da        Isoelectric Point: 7.8956

>NTDB_id=461927 HVX92_RS21385 WP_148047797.1 4479121..4480641(+) (comM) [Escherichia fergusonii strain RHB23-C02]
MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTANKLDEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEDEVGLINGEGCLIADHL
QAVCAFLEGKHALERPKPTDAVSRALQHDLSDVVGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE
EALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKAVVQG
ENSATVKQRVMAARERQFKRQNKLNARLDSPEIRQFCKLESEDALWLEETLIHLGLSIRAWQRLLKVARTIADIAQSDII
TRQHLQEAVSYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=461927 HVX92_RS21385 WP_148047797.1 4479121..4480641(+) (comM) [Escherichia fergusonii strain RHB23-C02]
ATGTCACTGTCAATTGTTCATACCCGCGCAGCCCTGGGAGTAAATGCGCCCCCAATCACTGTTGAGGTACATATCAGTAA
AGGTCTACCCGGCTTAACGATGGTGGGCTTACCAGAAACAACGGTAAAAGAAGCACGCGATCGCGTACGCAGCGCCATTA
TCAATAGCGGATATGAATATCCGGCGAAAAAAATCACCATCAACCTTGCTCCAGCCGATCTGCCGAAAGAAGGGGGACGA
TATGATTTACCTATCGCCATTGCGTTGCTGGCGGCCTCAGAACAGCTTACAGCCAATAAGTTAGATGAATATGAATTAGT
TGGAGAACTGGCGCTTACAGGCGCTCTGCGTGGCGTTCCCGGTGCAATCTCCAGTGCAACTGAAGCCATTAAGTCGGGCA
GAAAAATTATCGTCGCGAAAGACAACGAAGATGAAGTGGGGCTAATTAATGGTGAAGGATGCCTGATAGCCGATCATCTG
CAGGCTGTCTGTGCATTTCTGGAAGGTAAGCACGCTCTCGAACGCCCGAAACCAACTGATGCAGTATCCCGGGCGCTACA
ACATGATCTCAGTGATGTTGTCGGTCAGGAGCAAGGAAAGCGAGGACTGGAAATTACCGCCGCTGGCGGACACAACCTTT
TACTGATTGGACCGCCGGGAACAGGTAAAACAATGCTCGCCAGCCGTATTAATGGCCTGTTGCCAGATTTAAGCAATGAA
GAGGCACTGGAGAGCGCTGCGATATTAAGTCTGGTAAATGCTGAATCAGTACAAAAACAATGGCGGCAGCGCCCGTTCCG
CTCACCGCATCACAGTGCGTCGTTAACTGCGATGGTGGGCGGTGGTGCAATTCCAGGGCCTGGTGAAATTTCGCTGGCGC
ATAACGGCGTGCTTTTTCTTGATGAGCTACCTGAATTTGAACGGCGTACACTGGATGCCTTGCGAGAGCCGATTGAATCC
GGGCAGATCCATCTTTCACGCACGCGTGCCAAAATAACCTACCCGGCCCGTTTCCAGCTTGTTGCGGCGATGAATCCTAG
CCCTACCGGACATTATCAGGGAAACCATAACCGCTGCACACCAGAACAAACTCTGCGTTATCTCAACCGACTCTCTGGTC
CCTTTCTTGACCGATTCGACCTCTCACTGGAGATCCCACTACCGCCACCCGGTATTTTGAGTAAAGCGGTTGTTCAGGGG
GAAAACAGCGCCACCGTTAAACAACGCGTAATGGCCGCCAGAGAGCGCCAATTTAAGCGGCAGAATAAACTGAATGCCAG
GCTGGATAGTCCGGAAATACGGCAATTCTGCAAGCTTGAGAGCGAAGATGCGTTGTGGCTGGAAGAAACGCTAATCCATC
TGGGGTTATCGATTCGTGCCTGGCAGCGGTTACTGAAAGTTGCACGAACCATTGCTGATATTGCTCAGTCTGACATTATC
ACACGTCAGCATTTGCAGGAGGCAGTTAGCTATCGTGCGATTGACCGTTTGCTCATCCATCTGCAAAAACTACTGACATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.513

100

0.591
  comM Glaesserella parasuis strain SC1401

58.974

100

0.591
  comM Vibrio cholerae strain A1552

59.163

99.209

0.587
  comM Vibrio campbellii strain DS40M4

58.167

99.209

0.577
  comM Legionella pneumophila str. Paris

48.394

98.419

0.476
  comM Legionella pneumophila strain ERS1305867

48.394

98.419

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.269

100

0.443