Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HVY04_RS20390 Genome accession   NZ_CP057509
Coordinates   4329940..4330473 (-) Length   177 a.a.
NCBI ID   WP_181517652.1    Uniprot ID   -
Organism   Citrobacter freundii strain RHB24-C03     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4324940..4335473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HVY04_RS20380 (HVY04_20385) - 4326889..4327170 (+) 282 WP_096758704.1 YjcB family protein -
  HVY04_RS20385 (HVY04_20390) - 4327252..4329561 (-) 2310 WP_174361436.1 autotransporter outer membrane beta-barrel domain-containing protein -
  HVY04_RS20390 (HVY04_20395) ssb 4329940..4330473 (-) 534 WP_181517652.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HVY04_RS20395 (HVY04_20400) uvrA 4330725..4333547 (+) 2823 WP_181819778.1 excinuclease ABC subunit UvrA -
  HVY04_RS20400 (HVY04_20405) - 4333645..4334001 (-) 357 WP_096758708.1 MmcQ/YjbR family DNA-binding protein -
  HVY04_RS20405 (HVY04_20410) aphA 4334129..4334842 (-) 714 WP_117343604.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18804.81 Da        Isoelectric Point: 5.2456

>NTDB_id=461902 HVY04_RS20390 WP_181517652.1 4329940..4330473(-) (ssb) [Citrobacter freundii strain RHB24-C03]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGNAGGGQQGGWGQPQQPQGGNQFSGGAQSRPQQSTP
AAPSNEPPIDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=461902 HVY04_RS20390 WP_181517652.1 4329940..4330473(-) (ssb) [Citrobacter freundii strain RHB24-C03]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGTGTTGTGCTGTTTGGCAAACTGGCGGAAGTCGCCAGCGAATATCTGCGCAAAGGTTCTCAGGTCTACATT
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCAGGTGTCGAGAAGTACACGACTGAAGTTGTTGTGAACGTCGG
CGGCACCATGCAAATGCTGGGTGGTCGTCAGGGCGGCGGTGCACCGGCGGGCGGTAATGCAGGTGGCGGTCAACAGGGTG
GTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAACCAGTTCAGCGGCGGTGCACAGTCTCGTCCGCAGCAGTCCACTCCG
GCAGCGCCGTCTAACGAACCGCCAATCGACTTTGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.333

100

0.746
  ssb Glaesserella parasuis strain SC1401

55.376

100

0.582
  ssb Neisseria meningitidis MC58

45.946

100

0.48
  ssb Neisseria gonorrhoeae MS11

46.961

100

0.48
  ssbA Bacillus subtilis subsp. subtilis str. 168

38.333

100

0.39