Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HVY07_RS20915 Genome accession   NZ_CP057505
Coordinates   4391665..4393185 (+) Length   506 a.a.
NCBI ID   WP_181673829.1    Uniprot ID   -
Organism   Escherichia fergusonii strain RHB24-C06     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4386665..4398185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HVY07_RS20890 (HVY07_20890) ilvE 4388219..4389148 (-) 930 WP_000208520.1 branched-chain-amino-acid transaminase -
  HVY07_RS20895 (HVY07_20895) ilvM 4389168..4389431 (-) 264 WP_000983255.1 acetolactate synthase 2 small subunit -
  HVY07_RS20900 (HVY07_20900) ilvG 4389428..4391074 (-) 1647 WP_181673828.1 acetolactate synthase 2 catalytic subunit -
  HVY07_RS20905 (HVY07_20905) ilvX 4391077..4391127 (-) 51 WP_001387183.1 peptide IlvX -
  HVY07_RS20910 (HVY07_20910) ilvL 4391214..4391312 (-) 99 WP_001311244.1 ilv operon leader peptide -
  HVY07_RS20915 (HVY07_20915) comM 4391665..4393185 (+) 1521 WP_181673829.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HVY07_RS20920 (HVY07_20920) maoP 4393210..4393548 (-) 339 WP_000841001.1 macrodomain Ori organization protein MaoP -
  HVY07_RS20925 (HVY07_20925) hdfR 4393667..4394506 (+) 840 WP_000379254.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55196.40 Da        Isoelectric Point: 7.6191

>NTDB_id=461863 HVY07_RS20915 WP_181673829.1 4391665..4393185(+) (comM) [Escherichia fergusonii strain RHB24-C06]
MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTANKLDEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEDEVGLINGEGCLIADHL
QAVCTFLEGKHALERPKPTDAVSRALQHDLSDVVGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE
EALESAAILSLVNTESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKAVVQG
ENSATVKQRVMAARERQLKRQNKLNAWLDSPEIRQFCKLESEDALWLEETLIHLGLSIRAWQRLLKVARTIADIAQSDII
TRQHLQEAVSYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=461863 HVY07_RS20915 WP_181673829.1 4391665..4393185(+) (comM) [Escherichia fergusonii strain RHB24-C06]
ATGTCACTGTCAATTGTTCATACCCGCGCAGCCCTGGGAGTAAATGCGCCCCCAATCACTGTTGAGGTACATATCAGTAA
AGGTCTACCCGGCTTAACGATGGTGGGCTTACCAGAAACAACGGTAAAAGAAGCTCGCGATCGCGTGCGCAGCGCCATTA
TCAATAGCGGATATGAATATCCGGCGAAAAAAATCACCATCAACCTTGCTCCAGCCGATCTGCCGAAAGAAGGGGGACGA
TATGATTTACCTATCGCCATTGCGTTGCTGGCGGCCTCAGAACAGCTTACAGCCAATAAGTTAGATGAATATGAATTAGT
CGGAGAACTGGCGCTTACAGGCGCTCTACGTGGCGTTCCCGGCGCAATCTCCAGTGCAACTGAAGCCATTAAGTCGGGCA
GAAAAATTATCGTCGCGAAAGATAACGAAGATGAAGTGGGGCTAATTAACGGTGAAGGATGCCTGATAGCCGATCATCTG
CAGGCTGTCTGTACGTTTCTGGAAGGTAAGCACGCTCTCGAACGCCCGAAACCAACTGATGCAGTATCCCGGGCGCTACA
ACATGATCTCAGTGATGTTGTCGGTCAGGAGCAAGGAAAGCGAGGACTGGAAATTACCGCCGCTGGCGGACACAACCTTT
TACTGATTGGACCGCCGGGAACAGGTAAAACAATGCTCGCCAGCCGTATTAATGGCCTGTTGCCAGATTTAAGCAATGAA
GAGGCTCTGGAAAGTGCTGCGATATTAAGTCTGGTAAATACTGAATCAGTACAAAAACAATGGCGGCAACGCCCGTTCCG
CTCACCACATCACAGTGCGTCGTTAACCGCGATGGTGGGCGGAGGCGCAATTCCTGGGCCAGGTGAAATTTCGCTGGCGC
ATAACGGCGTGCTTTTTCTTGATGAACTACCTGAATTTGAACGACGTACACTGGATGCCTTGCGGGAGCCGATTGAATCC
GGGCAGATCCATCTTTCACGCACGCGAGCCAAAATAACCTACCCGGCCCGTTTCCAGCTTGTTGCGGCGATGAATCCCAG
CCCTACCGGACATTATCAGGGAAACCATAACCGCTGCACACCAGAACAAACTCTGCGTTATCTCAACCGACTCTCTGGTC
CCTTTCTTGACCGATTCGACCTCTCACTGGAGATCCCACTACCGCCACCCGGTATTTTGAGTAAAGCGGTTGTTCAGGGG
GAAAACAGCGCCACCGTTAAACAACGCGTAATGGCCGCCAGAGAGCGCCAATTAAAGCGGCAGAATAAACTGAATGCCTG
GCTGGATAGTCCGGAAATACGCCAATTCTGCAAGCTTGAGAGCGAAGATGCGTTGTGGCTGGAAGAAACGCTAATCCATC
TGGGGTTATCGATTCGTGCCTGGCAGCGGTTACTGAAAGTTGCACGAACCATTGCTGATATTGCTCAGTCTGACATTATC
ACACGTCAGCATTTGCAGGAGGCAGTTAGCTATCGTGCGATTGACCGTTTGCTCATCCATCTGCAAAAACTACTGACATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.513

100

0.591
  comM Glaesserella parasuis strain SC1401

58.777

100

0.589
  comM Vibrio cholerae strain A1552

59.163

99.209

0.587
  comM Vibrio campbellii strain DS40M4

58.167

99.209

0.577
  comM Legionella pneumophila str. Paris

48.394

98.419

0.476
  comM Legionella pneumophila strain ERS1305867

48.394

98.419

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.269

100

0.443