Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HVY70_RS03840 | Genome accession | NZ_CP057330 |
| Coordinates | 798049..798564 (+) | Length | 171 a.a. |
| NCBI ID | WP_181693904.1 | Uniprot ID | - |
| Organism | Klebsiella oxytoca strain RHB30-C02 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 785605..848430 | 798049..798564 | within | 0 |
Gene organization within MGE regions
Location: 785605..848430
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVY70_RS03770 (HVY70_03770) | - | 785718..786590 (+) | 873 | WP_181693892.1 | ParA family protein | - |
| HVY70_RS03775 (HVY70_03775) | - | 786587..786943 (+) | 357 | WP_181693893.1 | hypothetical protein | - |
| HVY70_RS03780 (HVY70_03780) | - | 786940..787182 (+) | 243 | WP_181693894.1 | hypothetical protein | - |
| HVY70_RS03785 (HVY70_03785) | dnaB-PI | 787192..788562 (+) | 1371 | WP_181693895.1 | SPI-7-type island replicative DNA helicase | - |
| HVY70_RS03790 (HVY70_03790) | - | 788559..790226 (+) | 1668 | WP_181693896.1 | ParB family protein | - |
| HVY70_RS03795 (HVY70_03795) | - | 790219..790941 (+) | 723 | WP_181693993.1 | DUF2786 domain-containing protein | - |
| HVY70_RS03800 (HVY70_03800) | - | 790938..791363 (+) | 426 | WP_181693897.1 | hypothetical protein | - |
| HVY70_RS03805 (HVY70_03805) | - | 791360..791968 (+) | 609 | WP_181693898.1 | DUF2857 domain-containing protein | - |
| HVY70_RS29840 | - | 791965..792213 (+) | 249 | WP_227636270.1 | hypothetical protein | - |
| HVY70_RS03810 (HVY70_03810) | - | 792304..793542 (+) | 1239 | WP_181693899.1 | STY4528 family pathogenicity island replication protein | - |
| HVY70_RS03815 (HVY70_03815) | - | 793502..793756 (-) | 255 | WP_181693900.1 | hypothetical protein | - |
| HVY70_RS03820 (HVY70_03820) | - | 793828..794583 (+) | 756 | WP_181693901.1 | TIGR03761 family integrating conjugative element protein | - |
| HVY70_RS03825 (HVY70_03825) | - | 794597..796642 (+) | 2046 | WP_181693902.1 | DNA topoisomerase III | - |
| HVY70_RS03830 (HVY70_03830) | - | 797291..797755 (+) | 465 | WP_181693903.1 | STY4534 family ICE replication protein | - |
| HVY70_RS03835 (HVY70_03835) | - | 797833..798036 (+) | 204 | WP_032191374.1 | hypothetical protein | - |
| HVY70_RS03840 (HVY70_03840) | ssb | 798049..798564 (+) | 516 | WP_181693904.1 | single-stranded DNA-binding protein | Machinery gene |
| HVY70_RS03845 (HVY70_03845) | - | 799092..799961 (+) | 870 | WP_181693905.1 | hypothetical protein | - |
| HVY70_RS03850 (HVY70_03850) | - | 800524..801609 (-) | 1086 | WP_123828779.1 | hypothetical protein | - |
| HVY70_RS03855 (HVY70_03855) | - | 801852..801941 (+) | 90 | WP_227636269.1 | DUF2442 domain-containing protein | - |
| HVY70_RS03860 (HVY70_03860) | - | 802071..802667 (+) | 597 | WP_181693906.1 | PilL N-terminal domain-containing protein | - |
| HVY70_RS03865 (HVY70_03865) | - | 802664..803386 (+) | 723 | WP_181693907.1 | hypothetical protein | - |
| HVY70_RS03870 (HVY70_03870) | - | 803393..804097 (+) | 705 | WP_181693908.1 | TIGR03759 family integrating conjugative element protein | - |
| HVY70_RS03875 (HVY70_03875) | - | 804076..804750 (+) | 675 | WP_181693909.1 | transglycosylase SLT domain-containing protein | - |
| HVY70_RS03880 (HVY70_03880) | - | 804750..805262 (+) | 513 | WP_181693910.1 | integrating conjugative element protein | - |
| HVY70_RS03885 (HVY70_03885) | - | 805262..805861 (+) | 600 | WP_016190705.1 | restriction endonuclease | - |
| HVY70_RS03890 (HVY70_03890) | - | 805858..806370 (+) | 513 | WP_181693911.1 | hypothetical protein | - |
| HVY70_RS03895 (HVY70_03895) | traD | 806363..808453 (+) | 2091 | WP_181693912.1 | type IV conjugative transfer system coupling protein TraD | - |
| HVY70_RS03900 (HVY70_03900) | - | 808446..809204 (+) | 759 | WP_181693913.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| HVY70_RS03905 (HVY70_03905) | - | 809506..810498 (-) | 993 | WP_181693914.1 | DUF4928 family protein | - |
| HVY70_RS03910 (HVY70_03910) | dcm | 810491..811630 (-) | 1140 | WP_181693915.1 | DNA (cytosine-5-)-methyltransferase | - |
| HVY70_RS03915 (HVY70_03915) | - | 811968..812309 (+) | 342 | WP_181693916.1 | RAQPRD family integrative conjugative element protein | - |
| HVY70_RS03920 (HVY70_03920) | - | 812309..812551 (+) | 243 | WP_016190712.1 | TIGR03758 family integrating conjugative element protein | - |
| HVY70_RS03925 (HVY70_03925) | - | 812582..812968 (+) | 387 | WP_109240647.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| HVY70_RS03930 (HVY70_03930) | - | 812978..813334 (+) | 357 | WP_016190714.1 | TIGR03750 family conjugal transfer protein | - |
| HVY70_RS03935 (HVY70_03935) | - | 813331..813990 (+) | 660 | WP_101862487.1 | TIGR03746 family integrating conjugative element protein | - |
| HVY70_RS03940 (HVY70_03940) | - | 813990..814919 (+) | 930 | WP_181693917.1 | TIGR03749 family integrating conjugative element protein | - |
| HVY70_RS03945 (HVY70_03945) | - | 814909..816414 (+) | 1506 | WP_181693918.1 | TIGR03752 family integrating conjugative element protein | - |
| HVY70_RS03950 (HVY70_03950) | - | 816426..816839 (+) | 414 | WP_181693919.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| HVY70_RS03955 (HVY70_03955) | - | 816839..819703 (+) | 2865 | WP_181693920.1 | conjugative transfer ATPase | - |
| HVY70_RS03960 (HVY70_03960) | - | 819700..820086 (+) | 387 | WP_181693921.1 | acetyltransferase | - |
| HVY70_RS03965 (HVY70_03965) | - | 820234..820695 (-) | 462 | WP_181693922.1 | DUF4231 domain-containing protein | - |
| HVY70_RS03970 (HVY70_03970) | - | 820711..821940 (-) | 1230 | WP_181693923.1 | hypothetical protein | - |
| HVY70_RS03975 (HVY70_03975) | - | 821921..822424 (-) | 504 | WP_181693924.1 | response regulator | - |
| HVY70_RS03980 (HVY70_03980) | - | 822434..825949 (-) | 3516 | WP_181693925.1 | hypothetical protein | - |
| HVY70_RS03985 (HVY70_03985) | - | 826667..827068 (+) | 402 | WP_117075971.1 | TIGR03757 family integrating conjugative element protein | - |
| HVY70_RS03990 (HVY70_03990) | - | 827065..828057 (+) | 993 | WP_181693926.1 | TIGR03756 family integrating conjugative element protein | - |
| HVY70_RS03995 (HVY70_03995) | - | 828069..829502 (+) | 1434 | WP_181693927.1 | integrating conjugative element protein | - |
| HVY70_RS04000 (HVY70_04000) | - | 829516..829869 (+) | 354 | WP_181693928.1 | hypothetical protein | - |
| HVY70_RS04005 (HVY70_04005) | - | 829876..831417 (+) | 1542 | WP_097582736.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| HVY70_RS04010 (HVY70_04010) | - | 831452..831631 (-) | 180 | WP_016190727.1 | hypothetical protein | - |
| HVY70_RS04015 (HVY70_04015) | - | 831779..832336 (+) | 558 | WP_227636267.1 | hypothetical protein | - |
| HVY70_RS04020 (HVY70_04020) | - | 832462..833163 (+) | 702 | WP_181693929.1 | YkgJ family cysteine cluster protein | - |
| HVY70_RS04025 (HVY70_04025) | - | 834137..835039 (+) | 903 | WP_181693930.1 | integrase domain-containing protein | - |
| HVY70_RS04030 (HVY70_04030) | - | 835036..835623 (+) | 588 | WP_181693931.1 | hypothetical protein | - |
| HVY70_RS04035 (HVY70_04035) | - | 835984..836322 (+) | 339 | WP_016190731.1 | hypothetical protein | - |
| HVY70_RS04040 (HVY70_04040) | - | 836460..837458 (+) | 999 | WP_181693932.1 | hypothetical protein | - |
| HVY70_RS04045 (HVY70_04045) | - | 837566..838180 (+) | 615 | WP_181693933.1 | hypothetical protein | - |
| HVY70_RS04050 (HVY70_04050) | - | 838253..839314 (+) | 1062 | WP_227636266.1 | ArdC-like ssDNA-binding domain-containing protein | - |
| HVY70_RS04055 (HVY70_04055) | - | 839421..840356 (+) | 936 | WP_181693934.1 | DUF1281 domain-containing protein | - |
| HVY70_RS04060 (HVY70_04060) | - | 840476..841159 (+) | 684 | WP_181693935.1 | N-6 DNA methylase | - |
| HVY70_RS04065 (HVY70_04065) | - | 841338..843848 (-) | 2511 | WP_181693936.1 | DEAD/DEAH box helicase | - |
| HVY70_RS04070 (HVY70_04070) | - | 844106..845590 (+) | 1485 | WP_181693937.1 | UvrD-helicase domain-containing protein | - |
| HVY70_RS04075 (HVY70_04075) | - | 845584..847149 (+) | 1566 | WP_181693938.1 | TraI domain-containing protein | - |
| HVY70_RS04080 (HVY70_04080) | - | 847210..848220 (+) | 1011 | WP_181693939.1 | site-specific integrase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 18872.88 Da Isoelectric Point: 7.3174
>NTDB_id=461644 HVY70_RS03840 WP_181693904.1 798049..798564(+) (ssb) [Klebsiella oxytoca strain RHB30-C02]
MASRGINKVILVGNLGQDPEVRYMPNSNAVTTLSIATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWQDQHGQDRYSTEVVVNVNGSMQMLGSRQRSGSSSSQHQGSQQQGWGQPQQPVSGGQPSQVGPSSTGRTAAG
MPMDFDDDIPF
MASRGINKVILVGNLGQDPEVRYMPNSNAVTTLSIATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWQDQHGQDRYSTEVVVNVNGSMQMLGSRQRSGSSSSQHQGSQQQGWGQPQQPVSGGQPSQVGPSSTGRTAAG
MPMDFDDDIPF
Nucleotide
Download Length: 516 bp
>NTDB_id=461644 HVY70_RS03840 WP_181693904.1 798049..798564(+) (ssb) [Klebsiella oxytoca strain RHB30-C02]
ATGGCTTCACGTGGAATTAACAAAGTCATTCTGGTTGGAAATTTAGGCCAGGATCCTGAAGTGCGCTATATGCCCAACAG
TAACGCAGTGACCACGCTGTCGATAGCGACTTCAGAGAGCTGGCGCGATAAGCAAACCGGCGAAATGAAAGAGCAGACCG
AATGGCACCGTGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCCAGTGAATATCTGCGTAAAGGCTCGCAGGTGTATATT
GAAGGCCAGTTACGTACCCGTAAATGGCAGGATCAGCATGGCCAGGATCGTTATTCTACCGAAGTGGTGGTCAACGTGAA
CGGTAGCATGCAGATGCTGGGGAGTCGTCAACGGTCGGGTAGCTCCTCTTCCCAACACCAGGGCTCTCAACAGCAGGGAT
GGGGACAACCTCAGCAGCCTGTATCAGGTGGTCAGCCGTCTCAGGTTGGGCCGTCGTCAACCGGACGCACCGCTGCCGGC
ATGCCGATGGATTTTGACGACGATATCCCCTTTTGA
ATGGCTTCACGTGGAATTAACAAAGTCATTCTGGTTGGAAATTTAGGCCAGGATCCTGAAGTGCGCTATATGCCCAACAG
TAACGCAGTGACCACGCTGTCGATAGCGACTTCAGAGAGCTGGCGCGATAAGCAAACCGGCGAAATGAAAGAGCAGACCG
AATGGCACCGTGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCCAGTGAATATCTGCGTAAAGGCTCGCAGGTGTATATT
GAAGGCCAGTTACGTACCCGTAAATGGCAGGATCAGCATGGCCAGGATCGTTATTCTACCGAAGTGGTGGTCAACGTGAA
CGGTAGCATGCAGATGCTGGGGAGTCGTCAACGGTCGGGTAGCTCCTCTTCCCAACACCAGGGCTCTCAACAGCAGGGAT
GGGGACAACCTCAGCAGCCTGTATCAGGTGGTCAGCCGTCTCAGGTTGGGCCGTCGTCAACCGGACGCACCGCTGCCGGC
ATGCCGATGGATTTTGACGACGATATCCCCTTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
67.232 |
100 |
0.696 |
| ssb | Glaesserella parasuis strain SC1401 |
52.973 |
100 |
0.573 |
| ssb | Neisseria gonorrhoeae MS11 |
42.938 |
100 |
0.444 |
| ssb | Neisseria meningitidis MC58 |
42.614 |
100 |
0.439 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
35.593 |
100 |
0.368 |