Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HVZ37_RS22205 Genome accession   NZ_CP057150
Coordinates   4681196..4682716 (+) Length   506 a.a.
NCBI ID   WP_181627983.1    Uniprot ID   -
Organism   Citrobacter sp. RHB35-C17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4676196..4687716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HVZ37_RS22185 (HVZ37_22190) ilvE 4677751..4678680 (-) 930 WP_042998773.1 branched-chain-amino-acid transaminase -
  HVZ37_RS22190 (HVZ37_22195) ilvM 4678699..4678962 (-) 264 WP_042326055.1 acetolactate synthase 2 small subunit -
  HVZ37_RS22195 (HVZ37_22200) ilvG 4678959..4680605 (-) 1647 WP_181627982.1 acetolactate synthase 2 catalytic subunit -
  HVZ37_RS23035 ilvX 4680608..4680658 (-) 51 WP_193762813.1 peptide IlvX -
  HVZ37_RS22200 (HVZ37_22205) ilvL 4680745..4680843 (-) 99 WP_001311244.1 ilv operon leader peptide -
  HVZ37_RS22205 (HVZ37_22210) comM 4681196..4682716 (+) 1521 WP_181627983.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HVZ37_RS22210 (HVZ37_22215) maoP 4682741..4683079 (-) 339 WP_042326051.1 macrodomain Ori organization protein MaoP -
  HVZ37_RS22215 (HVZ37_22220) hdfR 4683198..4684031 (+) 834 WP_181627984.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55046.86 Da        Isoelectric Point: 7.2053

>NTDB_id=461395 HVZ37_RS22205 WP_181627983.1 4681196..4682716(+) (comM) [Citrobacter sp. RHB35-C17]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTLVGLPETTVKEARDRVRSAIINSGYDFPAKKITINLAPADLPKEGGR
YDLPIAVALLVASEQLTTHKLDQYELVGELALTGALRGVPGAISSATEAIRVGRGIIVAKENEDEVGLIEGEGCLVADHL
QAVCAFLEGKHDLSHPVVNNDTISVSSDDLSDIIGQEQGKRSLEITAAGGHNLLLVGPPGTGKTMLASRLNGLLPALSNE
EALESAAILSLVNSTSVQKLWKQRPFRSPHHSASLTAMVGGGTIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRNTPEQTLRYLSRLSGPFLDRFDLSLEIPLPPPGILSQPGVKG
ENSFTVKHRVIAARERQHKRQGKLNAHLQNREIREHCPLADEDAQWLEETLIHLGLSIRAWQRLLKVSRTIADLAQAEHI
SRRHLQEAVSYRAIDRLLAHLQKQLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=461395 HVZ37_RS22205 WP_181627983.1 4681196..4682716(+) (comM) [Citrobacter sp. RHB35-C17]
ATGTCACTGTCAATTGTTCATACACGCGCTGCGCTGGGTGTCAATGCACCGGCGATTACTATCGAAGTGCATATCAGCAA
CGGTTTACCCGGTTTAACACTGGTGGGGTTACCAGAAACGACCGTCAAAGAGGCGCGCGACCGGGTACGCAGCGCGATCA
TTAATAGCGGATATGACTTTCCCGCAAAGAAAATCACCATCAATCTCGCCCCTGCCGATCTTCCCAAAGAGGGCGGGAGA
TATGATTTACCTATTGCTGTGGCGCTTCTGGTTGCCTCTGAGCAGCTTACAACCCATAAACTCGACCAATATGAGTTAGT
GGGTGAATTAGCGCTTACAGGTGCGTTACGCGGCGTTCCCGGCGCCATATCCAGCGCAACCGAGGCGATACGGGTGGGAA
GGGGCATTATCGTGGCAAAAGAGAACGAAGACGAAGTCGGGCTGATTGAGGGTGAAGGATGTCTGGTTGCCGATCATCTA
CAAGCTGTCTGTGCCTTCCTGGAAGGAAAACATGACCTTAGCCATCCTGTTGTTAACAACGACACTATCAGTGTGTCATC
AGATGATCTCAGCGATATTATTGGTCAGGAGCAAGGGAAGCGCAGCCTTGAGATCACCGCCGCAGGTGGCCACAATCTGC
TATTAGTTGGCCCACCGGGTACGGGGAAAACGATGCTTGCCAGCCGTCTTAATGGCCTGTTGCCGGCATTAAGTAACGAA
GAAGCCCTGGAAAGCGCCGCTATCCTCAGTCTGGTTAACTCGACCAGCGTGCAAAAGTTATGGAAACAACGACCTTTTCG
CTCACCACACCACAGCGCATCCCTGACCGCCATGGTTGGTGGCGGAACTATCCCCGCGCCAGGCGAAATTTCTTTGGCAC
ACAACGGCATACTGTTTCTTGATGAGCTGCCTGAGTTTGAACGACGCACATTAGATGCTCTACGTGAACCGATAGAGTCT
GGTCAGATCCACCTTTCGCGCACGCGCGCTAAGATCACCTATCCTGCGCGCTTTCAATTGGTAGCGGCAATGAATCCCAG
TCCCACCGGTCATTATCAGGGCAACCATAACCGCAATACGCCTGAACAGACATTACGCTATCTCAGTCGGCTATCGGGCC
CCTTTCTGGACCGCTTTGATCTTTCTCTTGAGATCCCTCTCCCACCGCCAGGCATACTCAGCCAACCAGGTGTAAAGGGA
GAAAACAGCTTTACGGTTAAACATCGGGTCATTGCTGCGCGGGAACGTCAGCATAAACGCCAGGGCAAATTGAATGCACA
CCTGCAAAACAGGGAGATACGTGAACACTGCCCATTAGCAGATGAAGACGCGCAGTGGCTTGAAGAGACCCTCATCCATC
TTGGATTGTCTATACGCGCCTGGCAACGGTTATTAAAGGTATCGAGGACTATTGCCGATCTCGCGCAAGCCGAACACATT
TCACGAAGACACTTGCAGGAAGCGGTCAGTTACCGGGCGATAGATCGTCTGCTTGCTCACCTGCAGAAACAACTGACATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

60.198

99.802

0.601
  comM Haemophilus influenzae Rd KW20

59.289

100

0.593
  comM Glaesserella parasuis strain SC1401

58.35

100

0.587
  comM Vibrio campbellii strain DS40M4

58.614

99.802

0.585
  comM Legionella pneumophila str. Paris

46.881

98.221

0.46
  comM Legionella pneumophila strain ERS1305867

46.881

98.221

0.46
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.942

99.407

0.427