Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HVZ66_RS21890 Genome accession   NZ_CP057104
Coordinates   4525399..4526919 (+) Length   506 a.a.
NCBI ID   WP_181590980.1    Uniprot ID   -
Organism   Escherichia fergusonii strain RHB38-C01     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4520399..4531919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HVZ66_RS21865 (HVZ66_21865) ilvE 4521953..4522882 (-) 930 WP_181590978.1 branched-chain-amino-acid transaminase -
  HVZ66_RS21870 (HVZ66_21870) ilvM 4522902..4523165 (-) 264 WP_000983255.1 acetolactate synthase 2 small subunit -
  HVZ66_RS21875 (HVZ66_21875) ilvG 4523162..4524808 (-) 1647 WP_181590979.1 acetolactate synthase 2 catalytic subunit -
  HVZ66_RS21880 (HVZ66_21880) ilvX 4524811..4524861 (-) 51 WP_001387183.1 peptide IlvX -
  HVZ66_RS21885 (HVZ66_21885) ilvL 4524948..4525046 (-) 99 WP_001311244.1 ilv operon leader peptide -
  HVZ66_RS21890 (HVZ66_21890) comM 4525399..4526919 (+) 1521 WP_181590980.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HVZ66_RS21895 (HVZ66_21895) maoP 4526945..4527283 (-) 339 WP_000841001.1 macrodomain Ori organization protein MaoP -
  HVZ66_RS21900 (HVZ66_21900) hdfR 4527402..4528241 (+) 840 WP_000379254.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55176.33 Da        Isoelectric Point: 7.1910

>NTDB_id=461304 HVZ66_RS21890 WP_181590980.1 4525399..4526919(+) (comM) [Escherichia fergusonii strain RHB38-C01]
MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTANKLDEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEDEVGLINGEGCLIADHL
QAVCAFLEGKHALECPKPTDGVSRILQHDLSDVVGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE
EALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPG
ESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAQWLEETLIHLGLSIRAWQRLLKVARTIADIDQSDII
TRQHLQEAVSYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=461304 HVZ66_RS21890 WP_181590980.1 4525399..4526919(+) (comM) [Escherichia fergusonii strain RHB38-C01]
ATGTCACTGTCAATTGTTCATACCCGCGCAGCCCTGGGAGTAAATGCGCCCCCAATCACTGTTGAGGTACATATCAGTAA
AGGTCTACCCGGCTTAACGATGGTGGGCTTACCAGAAACAACGGTAAAAGAAGCACGCGATCGCGTACGCAGCGCCATTA
TCAATAGCGGATATGAATATCCGGCGAAAAAAATCACCATCAACCTTGCTCCAGCCGATCTGCCGAAAGAAGGGGGACGA
TATGATTTACCTATCGCCATTGCGTTGCTGGCGGCCTCAGAACAGCTTACAGCCAATAAGTTAGATGAATATGAATTAGT
TGGAGAACTGGCGCTTACAGGCGCTCTGCGTGGCGTTCCCGGTGCAATCTCCAGTGCAACTGAAGCCATTAAGTCGGGCA
GAAAAATTATCGTCGCGAAAGACAACGAAGATGAAGTGGGGCTAATTAATGGTGAAGGATGCCTGATAGCCGATCATCTG
CAGGCTGTCTGTGCATTTCTGGAAGGTAAACATGCTCTCGAATGCCCGAAACCAACTGATGGTGTATCCCGGATATTACA
ACATGATCTCAGTGATGTTGTCGGTCAGGAGCAAGGAAAGCGAGGACTGGAAATTACCGCCGCAGGGGGGCACAACCTTT
TACTGATTGGACCGCCGGGAACAGGTAAAACAATGCTCGCTAGCCGTATTAATGGCCTGTTGCCAGATTTAAGCAATGAA
GAGGCTCTGGAAAGTGCTGCGATATTAAGTCTGGTAAATGCTGAATCAGTACAAAAACAATGGCGGCAACGCCCGTTCCG
CTCACCACATCACAGTGCGTCGTTAACCGCGATGGTGGGCGGAGGCGCAATTCCTGGGCCAGGTGAAATTTCGCTGGCGC
ATAACGGCGTGCTTTTTCTTGATGAGCTACCTGAATTTGAACGGCGTACACTGGATGCCTTGCGAGAGCCGATTGAATCC
GGGCAGATCCATCTTTCACGCACGCGAGCAAAAATAACCTATCCAGCCCGTTTCCAGCTTGTCGCGGCGATGAATCCCAG
CCCTACCGGACATTATCAGGGAAACCATAACCGCTGCACACCAGAGCAAACGCTGCGTTATCTCAACCGACTCTCTGGTC
CCTTTCTCGACCGCTTCGATCTCTCACTGGAGATCCCATTACCGCCACCCGGCATTTTGAGTAAAACGGTAGTGCCGGGA
GAAAGCAGCGCCACCGTTAAACAACGCGTAATGGCCGCCAGAGAGCGCCAATTTAAGCGGCAGAATAAACTGAATGCCTG
GCTGGATAGTCCGGAAATACGCCAATTCTGCAAGCTTGAGAGCGAAGATGCGCAGTGGCTGGAAGAAACGCTGATCCATC
TGGGGTTATCGATTCGTGCCTGGCAGCGGTTACTGAAAGTTGCACGAACCATTGCTGATATTGATCAGTCCGACATTATC
ACACGTCAGCATTTGCAGGAGGCAGTTAGCTATCGTGCCATTGACCGTTTGCTCATCCATCTGCAAAAACTACTGACATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.708

100

0.593
  comM Vibrio cholerae strain A1552

59.363

99.209

0.589
  comM Glaesserella parasuis strain SC1401

57.988

100

0.581
  comM Vibrio campbellii strain DS40M4

57.968

99.209

0.575
  comM Legionella pneumophila str. Paris

48.193

98.419

0.474
  comM Legionella pneumophila strain ERS1305867

48.193

98.419

0.474
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.984

100

0.441