Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JNN54_RS02695 Genome accession   NZ_CP068795
Coordinates   552558..553682 (+) Length   374 a.a.
NCBI ID   WP_061348924.1    Uniprot ID   -
Organism   Escherichia coli strain RIVM_C011532     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 547558..558682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN54_RS02670 (JNN54_02670) mscL 547684..548094 (-) 411 WP_072649931.1 large-conductance mechanosensitive channel protein MscL -
  JNN54_RS02675 (JNN54_02675) trkA 548224..549600 (-) 1377 WP_000691382.1 Trk system potassium transporter TrkA -
  JNN54_RS02680 (JNN54_02680) rsmB 549622..550911 (-) 1290 WP_000744778.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  JNN54_RS02685 (JNN54_02685) fmt 550957..551904 (-) 948 WP_000004438.1 methionyl-tRNA formyltransferase -
  JNN54_RS02690 (JNN54_02690) def 551919..552428 (-) 510 WP_000114984.1 peptide deformylase -
  JNN54_RS02695 (JNN54_02695) dprA 552558..553682 (+) 1125 WP_061348924.1 DNA-protecting protein DprA Machinery gene
  JNN54_RS02700 (JNN54_02700) smg 553654..554127 (+) 474 WP_000460670.1 DUF494 family protein Smg -
  JNN54_RS02705 (JNN54_02705) yrdD 554156..554698 (+) 543 WP_001129723.1 type I DNA topoisomerase -
  JNN54_RS02710 (JNN54_02710) tsaC 554703..555275 (+) 573 WP_001297709.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  JNN54_RS02715 (JNN54_02715) aroE 555280..556098 (+) 819 WP_064221635.1 shikimate dehydrogenase -
  JNN54_RS02720 (JNN54_02720) yrdB 556095..556352 (+) 258 WP_001070563.1 DUF1488 domain-containing protein -
  JNN54_RS02725 (JNN54_02725) yrdA 556328..556882 (-) 555 WP_001286216.1 gamma carbonic anhydrase family protein -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 41001.93 Da        Isoelectric Point: 6.2655

>NTDB_id=461070 JNN54_RS02695 WP_061348924.1 552558..553682(+) (dprA) [Escherichia coli strain RIVM_C011532]
MVDTEIWLRLMSISSLYGDDMVRIAHWVAKQSHIDAVVLQQTGLTLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSE
FYPPQLLATTDYPGALFVEGELHALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVN
GVSIAVLGSGLNTFHPRRHARLATSLLEHGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA
LEQGREVFALPGPLGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQEDVALPFPELLANVGDE
VTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=461070 JNN54_RS02695 WP_061348924.1 552558..553682(+) (dprA) [Escherichia coli strain RIVM_C011532]
ATGGTCGATACAGAAATTTGGCTGCGTTTAATGAGTATCAGCAGCTTGTACGGCGATGATATGGTCCGTATCGCTCACTG
GGTGGCAAAACAGTCGCATATTGATGCGGTTGTATTGCAGCAAACAGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT
CATTTCCACGAAAGAGTATCGAAAGCTCACTTTGTTGGTTGGAGCAACCCAACCATCATTTAATCCCTGCGGACAGCGAA
TTTTATCCTCCTCAACTTCTGGCGACGACAGATTACCCCGGCGCACTGTTTGTTGAAGGAGAACTGCACGCGCTGCATTC
ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGGGACGATTATTTTGCGAAACTCTGG
CGACGCGTGGAGTGACAATTACGAGTGGACTGGCGCGTGGAATCGATGGTGTGGCGCATAAAGCGGCCTTACAGGTAAAT
GGCGTCAGTATTGCTGTATTAGGGAGTGGACTTAATACCTTTCATCCGCGTCGCCATGCCCGACTGGCTACCAGTTTGCT
TGAACATGGTGGGGCTCTTGTCTCGGAATTTCCCCTCGATGTTCCACCCCTTGCTTACAATTTCCCACGAAGAAATCGCA
TTATCAGTGGTTTAAGTAAAGGCGTACTGGTGGTGGAAGCTGCTTTGCGCAGTGGTTCGCTGGTGACAGCACGTTGTGCG
CTTGAGCAGGGGCGTGAAGTTTTTGCCTTGCCTGGTCCATTAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA
ACAAGGTGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC
CTGAAAATTCATTTTATTCACCAGATCAGGAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG
GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTAACTCAATTACTCGAACTGGAGTT
AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG
TTTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)

DprA winged helix domain (WHD_DprA)

(312-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

48.509

98.663

0.479
  dprA Glaesserella parasuis strain SC1401

45.104

90.107

0.406
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

49.032

82.888

0.406
  dprA Vibrio cholerae strain A1552

49.032

82.888

0.406
  dprA Haemophilus influenzae Rd KW20

43.62

90.107

0.393
  dprA Legionella pneumophila strain ERS1305867

43.636

88.235

0.385