Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HV039_RS22795 | Genome accession | NZ_CP056896 |
| Coordinates | 4712089..4712616 (-) | Length | 175 a.a. |
| NCBI ID | WP_016155359.1 | Uniprot ID | A0AAE2J7N6 |
| Organism | Citrobacter sp. RHBSTW-00021 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 4673081..4735837 | 4712089..4712616 | within | 0 |
Gene organization within MGE regions
Location: 4673081..4735837
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV039_RS22620 (HV039_22625) | - | 4673081..4674599 (+) | 1519 | Protein_4457 | sugar ABC transporter ATP-binding protein | - |
| HV039_RS22625 (HV039_22630) | - | 4674592..4675587 (+) | 996 | WP_016155386.1 | hypothetical protein | - |
| HV039_RS22630 (HV039_22635) | - | 4675617..4676558 (+) | 942 | WP_019077849.1 | ABC transporter substrate-binding protein | - |
| HV039_RS25010 | - | 4677412..4677516 (-) | 105 | Protein_4461 | hypothetical protein | - |
| HV039_RS22640 (HV039_22645) | acs | 4677951..4679909 (+) | 1959 | WP_016155371.1 | acetate--CoA ligase | - |
| HV039_RS22645 (HV039_22650) | - | 4680146..4680460 (+) | 315 | WP_016155370.1 | DUF485 domain-containing protein | - |
| HV039_RS22650 (HV039_22655) | actP | 4680457..4682106 (+) | 1650 | WP_016155369.1 | cation/acetate symporter ActP | - |
| HV039_RS22655 (HV039_22660) | - | 4682149..4682838 (-) | 690 | WP_049268855.1 | LrgB family protein | - |
| HV039_RS22660 (HV039_22665) | - | 4682831..4683241 (-) | 411 | WP_016155367.1 | CidA/LrgA family protein | - |
| HV039_RS22665 (HV039_22670) | - | 4683343..4684233 (+) | 891 | WP_047357727.1 | LysR family transcriptional regulator | - |
| HV039_RS22670 (HV039_22675) | - | 4684318..4685964 (-) | 1647 | WP_016155450.1 | Na+/H+ antiporter | - |
| HV039_RS22675 (HV039_22680) | ghxP | 4686122..4687471 (-) | 1350 | WP_016155449.1 | guanine/hypoxanthine transporter GhxP | - |
| HV039_RS22680 (HV039_22685) | soxR | 4688075..4688533 (-) | 459 | WP_016155363.1 | redox-sensitive transcriptional activator SoxR | - |
| HV039_RS22685 (HV039_22690) | soxS | 4688620..4688943 (+) | 324 | WP_016155362.1 | superoxide response transcriptional regulator SoxS | - |
| HV039_RS22690 (HV039_22695) | - | 4688946..4690283 (-) | 1338 | Protein_4472 | EAL domain-containing protein | - |
| HV039_RS22695 (HV039_22700) | - | 4690352..4691332 (+) | 981 | WP_000019445.1 | IS5-like element ISKpn26 family transposase | - |
| HV039_RS25145 | - | 4691314..4691493 (+) | 180 | WP_326926169.1 | hypothetical protein | - |
| HV039_RS22700 (HV039_22705) | - | 4691782..4692063 (+) | 282 | WP_016155360.1 | YjcB family protein | - |
| HV039_RS22705 (HV039_22710) | - | 4692328..4692573 (-) | 246 | WP_048216952.1 | hypothetical protein | - |
| HV039_RS22710 (HV039_22715) | - | 4693231..4694595 (-) | 1365 | WP_059347288.1 | anti-phage deoxyguanosine triphosphatase | - |
| HV039_RS22715 (HV039_22720) | - | 4695123..4695689 (+) | 567 | WP_081051437.1 | DNA adenine methylase | - |
| HV039_RS22720 (HV039_22725) | - | 4695686..4696531 (+) | 846 | WP_048216955.1 | 8-oxoguanine DNA glycosylase | - |
| HV039_RS22725 (HV039_22730) | - | 4696475..4697149 (-) | 675 | WP_223862018.1 | dehydrogenase | - |
| HV039_RS22730 (HV039_22735) | - | 4697127..4697732 (-) | 606 | WP_048216956.1 | 7-cyano-7-deazaguanine synthase | - |
| HV039_RS22735 (HV039_22740) | - | 4697729..4698970 (-) | 1242 | WP_081051438.1 | PfkB family carbohydrate kinase | - |
| HV039_RS22740 (HV039_22745) | - | 4698967..4699299 (-) | 333 | WP_048216957.1 | hypothetical protein | - |
| HV039_RS22745 (HV039_22750) | - | 4699659..4700264 (+) | 606 | WP_048216958.1 | hypothetical protein | - |
| HV039_RS22750 (HV039_22755) | - | 4700549..4700791 (-) | 243 | WP_048216959.1 | hypothetical protein | - |
| HV039_RS25015 | - | 4701051..4701119 (+) | 69 | Protein_4486 | hypothetical protein | - |
| HV039_RS22755 (HV039_22760) | - | 4701221..4702252 (+) | 1032 | WP_001752311.1 | IS630-like element ISEc33 family transposase | - |
| HV039_RS22760 (HV039_22765) | - | 4702288..4702671 (+) | 384 | Protein_4488 | site-specific integrase | - |
| HV039_RS22765 (HV039_22770) | - | 4702675..4704801 (+) | 2127 | WP_059347289.1 | AAA family ATPase | - |
| HV039_RS22770 (HV039_22775) | - | 4704804..4706495 (+) | 1692 | WP_059347290.1 | ATP-dependent helicase | - |
| HV039_RS22775 (HV039_22780) | - | 4706696..4707115 (-) | 420 | WP_048216962.1 | hypothetical protein | - |
| HV039_RS22780 (HV039_22785) | - | 4707108..4709141 (-) | 2034 | WP_048216963.1 | integrase | - |
| HV039_RS22785 (HV039_22790) | - | 4709134..4710693 (-) | 1560 | WP_096150258.1 | site-specific integrase | - |
| HV039_RS22790 (HV039_22795) | - | 4710683..4711930 (-) | 1248 | WP_048216965.1 | site-specific integrase | - |
| HV039_RS22795 (HV039_22800) | ssb | 4712089..4712616 (-) | 528 | WP_016155359.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| HV039_RS22800 (HV039_22805) | uvrA | 4712868..4715690 (+) | 2823 | WP_016155358.1 | excinuclease ABC subunit UvrA | - |
| HV039_RS22805 (HV039_22810) | - | 4715785..4716141 (-) | 357 | WP_016155357.1 | MmcQ/YjbR family DNA-binding protein | - |
| HV039_RS22810 (HV039_22815) | aphA | 4716268..4716981 (-) | 714 | WP_003826615.1 | acid phosphatase AphA | - |
| HV039_RS22815 (HV039_22820) | tyrB | 4717231..4718424 (-) | 1194 | WP_103284322.1 | aromatic amino acid transaminase | - |
| HV039_RS22820 (HV039_22825) | alr | 4718554..4719633 (-) | 1080 | WP_016155354.1 | alanine racemase | - |
| HV039_RS22825 (HV039_22830) | dnaB | 4719681..4721096 (-) | 1416 | WP_003826610.1 | replicative DNA helicase | - |
| HV039_RS22830 (HV039_22835) | - | 4721161..4722144 (+) | 984 | WP_016155445.1 | quinone oxidoreductase | - |
| HV039_RS22835 (HV039_22840) | pspG | 4722377..4722619 (-) | 243 | WP_016155352.1 | envelope stress response protein PspG | - |
| HV039_RS22840 (HV039_22845) | dusA | 4722753..4723751 (-) | 999 | WP_016155444.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
| HV039_RS22845 (HV039_22850) | - | 4723859..4724347 (-) | 489 | WP_046275040.1 | cupin domain-containing protein | - |
| HV039_RS22850 (HV039_22855) | zur | 4724463..4724981 (+) | 519 | WP_046275041.1 | zinc uptake transcriptional repressor Zur | - |
| HV039_RS22855 (HV039_22860) | - | 4725030..4725239 (-) | 210 | WP_019077869.1 | CsbD family protein | - |
| HV039_RS22860 (HV039_22865) | dinF | 4725375..4726694 (-) | 1320 | WP_103284354.1 | MATE family efflux transporter DinF | - |
| HV039_RS22865 (HV039_22870) | lexA | 4726829..4727437 (-) | 609 | WP_003826596.1 | transcriptional repressor LexA | - |
| HV039_RS22870 (HV039_22875) | - | 4727547..4727915 (-) | 369 | WP_003826594.1 | diacylglycerol kinase | - |
| HV039_RS22875 (HV039_22880) | plsB | 4728087..4730507 (+) | 2421 | WP_103284355.1 | glycerol-3-phosphate 1-O-acyltransferase PlsB | - |
| HV039_RS22880 (HV039_22885) | ubiA | 4730568..4731440 (-) | 873 | WP_003826589.1 | 4-hydroxybenzoate octaprenyltransferase | - |
| HV039_RS22885 (HV039_22890) | ubiC | 4731454..4731951 (-) | 498 | WP_016155346.1 | chorismate lyase | - |
| HV039_RS22890 (HV039_22895) | malM | 4732132..4733079 (-) | 948 | WP_016155345.1 | maltose operon protein MalM | - |
| HV039_RS22895 (HV039_22900) | - | 4733193..4734551 (-) | 1359 | WP_016155344.1 | maltoporin | - |
| HV039_RS22900 (HV039_22905) | malK | 4734728..4735837 (-) | 1110 | WP_016155343.1 | maltose/maltodextrin ABC transporter ATP-binding protein MalK | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 18749.79 Da Isoelectric Point: 5.2456
>NTDB_id=460989 HV039_RS22795 WP_016155359.1 4712089..4712616(-) (ssb) [Citrobacter sp. RHBSTW-00021]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAA
PSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAA
PSNEPPMDFDDDIPF
Nucleotide
Download Length: 528 bp
>NTDB_id=460989 HV039_RS22795 WP_016155359.1 4712089..4712616(-) (ssb) [Citrobacter sp. RHBSTW-00021]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGTGTGGTGCTGTTCGGCAAACTGGCGGAAGTTGCCAGCGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGCGTAGAAAAGTACACCACTGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGTTGGGCGGTCGTCAGGGTGGTGGGGCTCCGGCAGGTGGCGGCCAGCAGCAGGGGGGTTGGGGTC
AGCCTCAGCAGCCGCAAGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCGGCTCCGGCAGCG
CCGTCTAATGAGCCGCCGATGGATTTCGACGACGATATTCCGTTCTAG
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGTGTGGTGCTGTTCGGCAAACTGGCGGAAGTTGCCAGCGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGCGTAGAAAAGTACACCACTGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGTTGGGCGGTCGTCAGGGTGGTGGGGCTCCGGCAGGTGGCGGCCAGCAGCAGGGGGGTTGGGGTC
AGCCTCAGCAGCCGCAAGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCGGCTCCGGCAGCG
CCGTCTAATGAGCCGCCGATGGATTTCGACGACGATATTCCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.586 |
100 |
0.771 |
| ssb | Glaesserella parasuis strain SC1401 |
57.609 |
100 |
0.606 |
| ssb | Neisseria meningitidis MC58 |
48.333 |
100 |
0.497 |
| ssb | Neisseria gonorrhoeae MS11 |
48.333 |
100 |
0.497 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
36.111 |
100 |
0.371 |