Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HWQ17_RS14130 Genome accession   NZ_CP056779
Coordinates   2957411..2958931 (-) Length   506 a.a.
NCBI ID   WP_148422461.1    Uniprot ID   -
Organism   Enterobacter pasteurii strain D41-sc-1712200     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2952411..2963931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWQ17_RS14120 (HWQ17_14120) hdfR 2956105..2956926 (-) 822 WP_148422503.1 HTH-type transcriptional regulator HdfR -
  HWQ17_RS14125 (HWQ17_14125) - 2957045..2957383 (+) 339 WP_006808641.1 DUF413 domain-containing protein -
  HWQ17_RS14130 (HWQ17_14130) comM 2957411..2958931 (-) 1521 WP_148422461.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HWQ17_RS14135 (HWQ17_14135) ilvL 2959273..2959371 (+) 99 WP_023620831.1 ilv operon leader peptide -
  HWQ17_RS23890 ilvX 2959458..2959508 (+) 51 WP_166792073.1 peptide IlvX -
  HWQ17_RS14140 (HWQ17_14140) ilvG 2959511..2961157 (+) 1647 WP_148422462.1 acetolactate synthase 2 catalytic subunit -
  HWQ17_RS14145 (HWQ17_14145) ilvM 2961154..2961417 (+) 264 WP_148422463.1 acetolactate synthase 2 small subunit -
  HWQ17_RS14150 (HWQ17_14150) ilvE 2961436..2962365 (+) 930 WP_148422464.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54669.59 Da        Isoelectric Point: 7.1544

>NTDB_id=460604 HWQ17_RS14130 WP_148422461.1 2957411..2958931(-) (comM) [Enterobacter pasteurii strain D41-sc-1712200]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYAFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTPTLSSCEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAWLEGRHELAEPQESDEAVPDSPDDLSDIMGQDQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIFSLVSATSLHNQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHLSRTRAKISYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLSKLSGPFLDRFDLSLEIPLPPPGLLRQTGLKG
ESSAVVRERVITAQARQYARQNTLNARLDNAGIRQFCSLTAEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTGI
ERRHLQEALSYRAIDRLLLHLQKMLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=460604 HWQ17_RS14130 WP_148422461.1 2957411..2958931(-) (comM) [Enterobacter pasteurii strain D41-sc-1712200]
ATGTCACTGTCTGTTGTTTATACACGCGCGGCTATCGGAGTGAAGGCACCGCTTATTTCTGTGGAGGTCCATTTAAGTAA
TGGACTGCCCGGACTGACGCTTGTCGGCTTACCCGAAACGACCGTCAAAGAGGCGAGGGATCGCGTACGCAGTGCAATCA
TCAATAGCGGTTATGCTTTTCCCGCGAAGAAGATCACCATTAATCTGGCGCCTGCTGATTTACCAAAGGAGGGCGGGCGA
TATGATTTACCTATTGCTATAGCGCTTCTCGCGGCTTCTGAACAGCTCAACACCCCGACGTTAAGCTCCTGCGAGTTCGT
AGGTGAATTAGCGCTTACAGGCGCGTTAAGAGGCGTTCCCGGCGCTATCTCGGGTGCGCTTGAAGCCATACGCGCAGGGA
GACAAATCATTGTAGCCAATGAAAATGCCTCTGAAGTCAGCCTTATCGCCGAAAAGGGGTGTCTGGTAGCGGGTCATTTA
CAGGAGGTTTGCGCCTGGCTGGAAGGCCGACACGAGCTTGCCGAACCGCAGGAGAGTGACGAGGCGGTGCCAGATTCGCC
CGATGACCTCAGCGATATTATGGGTCAGGATCAGGGTAAGCGGGCGTTAGAGATAACCGCCGCGGGTGGGCATAATCTGC
TGCTTATCGGTCCGCCAGGCACGGGTAAAACGATGCTGGCGAGCAGGTTAAGCGGCCTGCTGCCGCCCCTCAATAATCAC
GAAGCGCTCGAAAGCGCCGCGATTTTCAGCCTGGTCAGCGCAACGTCGCTGCATAATCAGTGGCGCCGCCGCCCTTTTCG
CTCTCCCCATCACAGCGCGTCTCTCACCGCCATGGTGGGCGGAGGGTCAATTCCAGGACCGGGTGAAATCTCACTGGCGC
ACAACGGTATCCTGTTTCTGGATGAATTACCCGAGTTTGAACGCCGCGTGCTGGATGCGCTGCGGGAACCGATTGAATCT
GGCGAGATCCATCTCTCTCGTACACGAGCCAAAATAAGCTATCCAGCGCGGTTTCAGCTGGTGGCCGCGATGAACCCCAG
CCCAACGGGCCATTATCAGGGTAACCATAACCGCTGCACGCCGGAGCAGACGCTGCGTTACCTGAGTAAGCTGTCCGGGC
CCTTTCTTGACCGTTTTGATTTATCGCTGGAGATCCCTCTGCCTCCTCCCGGCCTGCTGAGGCAAACCGGTTTGAAAGGC
GAAAGTTCGGCAGTCGTGCGGGAACGCGTCATTACGGCGCAGGCGCGGCAGTATGCTCGTCAGAACACGCTGAATGCCCG
GCTGGATAACGCCGGGATCCGACAATTCTGTTCTCTCACCGCGGAGGATGCAGGCTGGCTGGAAGAAACGCTGACGCGTT
TTGGGCTATCCATTCGCGCATGGCAGCGTTTGTTGAAAGTAGCGCGTACTATCGCCGACGTGGAGGGTTGCACAGGAATT
GAGAGGCGACATTTGCAGGAGGCACTTAGCTATCGGGCGATCGATCGGTTGCTGCTGCATCTGCAAAAAATGCTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

59.412

100

0.599
  comM Glaesserella parasuis strain SC1401

58.777

100

0.589
  comM Vibrio cholerae strain A1552

58.964

99.209

0.585
  comM Vibrio campbellii strain DS40M4

58.367

99.209

0.579
  comM Legionella pneumophila str. Paris

49.899

98.221

0.49
  comM Legionella pneumophila strain ERS1305867

49.899

98.221

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.59

100

0.437