Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HWQ17_RS11485 Genome accession   NZ_CP056779
Coordinates   2406024..2406548 (-) Length   174 a.a.
NCBI ID   WP_003860284.1    Uniprot ID   A0A9Q2WCG9
Organism   Enterobacter pasteurii strain D41-sc-1712200     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2401024..2411548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWQ17_RS11460 (HWQ17_11460) - 2401630..2402532 (+) 903 WP_148422205.1 Fe(3+) dicitrate ABC transporter substrate-binding protein FecB -
  HWQ17_RS11465 (HWQ17_11465) fecC 2402529..2403527 (+) 999 WP_148422207.1 iron-dicitrate ABC transporter permease FecC -
  HWQ17_RS11470 (HWQ17_11470) fecD 2403524..2404474 (+) 951 WP_148422208.1 Fe(3+) dicitrate ABC transporter permease subunit FecD -
  HWQ17_RS11475 (HWQ17_11475) fecE 2404475..2405242 (+) 768 WP_148422210.1 Fe(3+) dicitrate ABC transporter ATP-binding protein FecE -
  HWQ17_RS11480 (HWQ17_11480) - 2405288..2405923 (-) 636 WP_148422212.1 hypothetical protein -
  HWQ17_RS11485 (HWQ17_11485) ssb 2406024..2406548 (-) 525 WP_003860284.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HWQ17_RS11490 (HWQ17_11490) uvrA 2406800..2409622 (+) 2823 WP_148422214.1 excinuclease ABC subunit UvrA -
  HWQ17_RS11495 (HWQ17_11495) - 2409626..2409979 (-) 354 WP_148422293.1 MmcQ/YjbR family DNA-binding protein -
  HWQ17_RS11500 (HWQ17_11500) - 2409982..2410398 (-) 417 WP_063159204.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HWQ17_RS11505 (HWQ17_11505) aphA 2410510..2411223 (-) 714 WP_148422216.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18650.66 Da        Isoelectric Point: 5.2456

>NTDB_id=460598 HWQ17_RS11485 WP_003860284.1 2406024..2406548(-) (ssb) [Enterobacter pasteurii strain D41-sc-1712200]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=460598 HWQ17_RS11485 WP_003860284.1 2406024..2406548(-) (ssb) [Enterobacter pasteurii strain D41-sc-1712200]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTAGTGCTGTTTGGCAAGCTGGCAGAAGTGGCCGGTGAATATCTGCGTAAAGGCTCTCAGGTTTACATT
GAAGGCCAGCTGCGCACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTCAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCACCAGCGGGTGGCGGTCAGCAGCAGGGCGGCTGGGGCC
AGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCGGCACCG
TCTAACGAACCGCCAATGGATTTTGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.793
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374