Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   JKV45_RS01500 Genome accession   NZ_CP068678
Coordinates   294181..294606 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain NCCP15783     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 289181..299606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKV45_RS01485 (JKV45_01485) pilX 289751..290338 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  JKV45_RS01490 (JKV45_01490) pilY1 290350..293835 (+) 3486 WP_003110421.1 type 4a pilus biogenesis protein PilY1 -
  JKV45_RS01495 (JKV45_01495) pilY2 293837..294184 (+) 348 WP_003094713.1 type 4a fimbrial biogenesis protein PilY2 -
  JKV45_RS01500 (JKV45_01500) comF 294181..294606 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  JKV45_RS01505 (JKV45_01505) ispH 294653..295597 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  JKV45_RS01510 (JKV45_01510) fkpB 295683..296123 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  JKV45_RS01515 (JKV45_01515) lspA 296116..296625 (-) 510 WP_003110420.1 signal peptidase II -
  JKV45_RS01520 (JKV45_01520) ileS 296618..299449 (-) 2832 WP_003094730.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=460488 JKV45_RS01500 WP_003094721.1 294181..294606(+) (comF) [Pseudomonas aeruginosa strain NCCP15783]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=460488 JKV45_RS01500 WP_003094721.1 294181..294606(+) (comF) [Pseudomonas aeruginosa strain NCCP15783]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383