Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HV117_RS22055 Genome accession   NZ_CP056756
Coordinates   4590326..4591846 (+) Length   506 a.a.
NCBI ID   WP_047052187.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain RHBSTW-00198     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4585326..4596846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV117_RS22035 (HV117_22045) ilvE 4586893..4587822 (-) 930 WP_003860182.1 branched-chain-amino-acid transaminase -
  HV117_RS22040 (HV117_22050) ilvM 4587841..4588104 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  HV117_RS22045 (HV117_22055) ilvG 4588101..4589747 (-) 1647 WP_023304625.1 acetolactate synthase 2 catalytic subunit -
  HV117_RS23410 ilvX 4589750..4589800 (-) 51 WP_166792073.1 peptide IlvX -
  HV117_RS22050 (HV117_22060) ilvL 4589887..4589985 (-) 99 WP_001311244.1 ilv operon leader peptide -
  HV117_RS22055 (HV117_22065) comM 4590326..4591846 (+) 1521 WP_047052187.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HV117_RS22060 (HV117_22070) - 4591874..4592212 (-) 339 WP_006808641.1 DUF413 domain-containing protein -
  HV117_RS22065 (HV117_22075) hdfR 4592331..4593152 (+) 822 WP_047052189.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54660.58 Da        Isoelectric Point: 7.3360

>NTDB_id=460488 HV117_RS22055 WP_047052187.1 4590326..4591846(+) (comM) [Enterobacter hormaechei strain RHBSTW-00198]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYAFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTPGLGSCEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAWLEGRHELAEPQENDEVAPDSPEDLSDIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIFSLVSSTSLHKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHLSRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLSKLSGPFLDRFDLSLEIPLPPPGLLRQTGIKG
ESSAAVRERVIAAQARQYARQNRLNARLDNSGIRQFCSLNAEDAGWLEETLTRFGLSIRAWQRLLKVARTVADVEGCPGI
ERRHLQEALSYRAIDRLLLHLQKMLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=460488 HV117_RS22055 WP_047052187.1 4590326..4591846(+) (comM) [Enterobacter hormaechei strain RHBSTW-00198]
ATGTCACTGTCAGTTGTTTATACACGCGCGGCCATCGGCGTGAAGGCACCGCTTATTTCTGTAGAGGTTCATTTAAGTAA
TGGACTGCCCGGACTGACGCTGGTCGGCTTACCAGAAACGACCGTCAAAGAGGCGAGGGATCGCGTGCGCAGCGCAATTA
TTAATAGCGGTTATGCTTTTCCGGCGAAGAAGATCACCATCAACCTTGCGCCCGCCGATTTGCCAAAGGAGGGAGGGCGA
TATGATTTACCTATTGCTATAGCGCTTCTCGCGGCTTCTGAACAGCTCAATACGCCAGGGCTAGGCTCGTGCGAGTTCGT
GGGTGAATTAGCGCTTACAGGCGCGTTAAGAGGCGTTCCCGGAGCAATCTCGGGTGCGCTTGAAGCCATACGCGCGGGAA
GACAAATCATTGTGGCCAATGAAAATGCCTCTGAAGTTAGCCTTATTGCCGAAAAGGGGTGTCTTGTCGCGGGACATTTG
CAGGAGGTTTGCGCCTGGCTGGAAGGCCGACACGAGCTTGCCGAGCCGCAGGAGAATGACGAGGTGGCGCCAGATTCGCC
CGAGGATCTCAGCGATATTATGGGTCAGGAACAGGGTAAACGGGCGTTAGAGATAACGGCCGCGGGTGGGCATAACCTGT
TACTGATAGGTCCGCCAGGCACGGGGAAAACGATGCTGGCGAGCAGATTGAGCGGCCTGTTGCCACCCCTCAATAATCAC
GAAGCGCTGGAAAGCGCCGCGATATTTAGCCTGGTCAGTTCTACGTCGCTGCATAAACAGTGGCGCCGCCGTCCTTTCCG
CTCTCCACACCACAGTGCGTCTCTTACCGCGATGGTGGGCGGGGGTTCGATCCCCGGTCCGGGTGAAATCTCACTGGCGC
ACAACGGCATTCTCTTCCTGGATGAATTGCCAGAGTTTGAACGCCGCGTGCTGGATGCATTGCGGGAGCCGATTGAATCC
GGCGAAATCCATCTGTCTCGTACACGGGCCAAAATAAGCTACCCTGCGCAGTTTCAGCTGGTCGCCGCGATGAACCCTAG
CCCTACGGGTCATTATCAGGGCAACCATAACCGCTGTACGCCAGAGCAGACGCTGCGCTATCTGAGTAAGCTGTCCGGCC
CCTTCCTCGACCGTTTTGATTTATCTCTCGAGATCCCCCTGCCCCCACCCGGTCTGCTGAGGCAAACCGGTATCAAAGGC
GAAAGCTCAGCAGCTGTGCGTGAACGGGTTATTGCGGCGCAGGCGCGGCAGTATGCTCGTCAAAACAGGCTGAATGCCCG
GCTGGATAACAGTGGGATCCGACAGTTTTGTTCTCTCAACGCTGAAGATGCAGGCTGGCTGGAAGAGACACTGACGCGGT
TTGGGCTATCCATTCGCGCGTGGCAGCGTTTGTTGAAAGTTGCGCGCACGGTCGCCGACGTGGAGGGCTGCCCCGGAATA
GAGAGGCGGCATTTGCAGGAGGCATTAAGTTACCGTGCGATCGATCGGCTGCTGTTGCATCTGCAAAAAATGCTGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.317

100

0.589
  comM Glaesserella parasuis strain SC1401

58.58

100

0.587
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Vibrio campbellii strain DS40M4

58.333

99.605

0.581
  comM Legionella pneumophila str. Paris

49.899

98.221

0.49
  comM Legionella pneumophila strain ERS1305867

49.899

98.221

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.529

100

0.439