Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HV150_RS23865 Genome accession   NZ_CP056737
Coordinates   4923596..4925116 (+) Length   506 a.a.
NCBI ID   WP_106105313.1    Uniprot ID   -
Organism   Enterobacter roggenkampii strain RHBSTW-00309     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4918596..4930116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV150_RS23845 (HV150_23845) ilvE 4920163..4921092 (-) 930 WP_023326297.1 branched-chain-amino-acid transaminase -
  HV150_RS23850 (HV150_23850) ilvM 4921111..4921374 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  HV150_RS23855 (HV150_23855) ilvG 4921371..4923017 (-) 1647 WP_106105314.1 acetolactate synthase 2 catalytic subunit -
  HV150_RS26175 ilvX 4923020..4923070 (-) 51 WP_166792073.1 peptide IlvX -
  HV150_RS23860 (HV150_23860) ilvL 4923157..4923255 (-) 99 WP_001311244.1 ilv operon leader peptide -
  HV150_RS23865 (HV150_23865) comM 4923596..4925116 (+) 1521 WP_106105313.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HV150_RS23870 (HV150_23870) - 4925146..4925484 (-) 339 WP_008501577.1 DUF413 domain-containing protein -
  HV150_RS23875 (HV150_23875) hdfR 4925603..4926424 (+) 822 WP_021242824.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54854.83 Da        Isoelectric Point: 7.1226

>NTDB_id=460399 HV150_RS23865 WP_106105313.1 4923596..4925116(+) (comM) [Enterobacter roggenkampii strain RHBSTW-00309]
MSLSVVYTRAALGVKAPLVSVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVATENASEVSLIAEKGCLIAGHL
QEVCGWLEGRHELSEPEECDEAIADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSASLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSVKVRERVIAAQARQYARQNRLNARLDNAGIRQFCSLNSEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=460399 HV150_RS23865 WP_106105313.1 4923596..4925116(+) (comM) [Enterobacter roggenkampii strain RHBSTW-00309]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAGGCACCGCTTGTTTCCGTAGAGGTTCATTTGAGTAA
TGGGCTGCCTGGACTCACGCTTGTCGGGTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTTGCCCCCGCCGATCTGCCCAAAGAGGGCGGGCGA
TACGATTTACCTATCGCAATTGCGCTTCTCGCGGCTTCTGAGCAGCTTACTACGACCAGGCTAGGCTCGTACGAGTTCGT
GGGTGAACTCGCGCTCACAGGCGCATTGAGAGGCGTTCCCGGTGCGATATCGGGAGCGCTGGAAGCCATTCGTGCAGGGC
GGCAAATCATTGTCGCCACTGAAAACGCATCAGAAGTGAGTCTTATTGCCGAAAAGGGGTGTCTTATCGCCGGGCATCTT
CAGGAAGTGTGTGGCTGGCTGGAAGGCCGACATGAACTGTCCGAGCCGGAGGAGTGCGACGAGGCTATAGCAGATGCGCC
AGAAGATCTCAGTGAGATCATGGGACAGGAGCAAGGTAAACGGGCGCTGGAGATTACGGCTGCAGGTGGACACAATCTCC
TGCTGATTGGCCCGCCTGGTACAGGTAAAACGATGCTGGCGAGCAGGCTGAGCGGGTTGCTCCCGCCGCTCAATAATCAT
GAAGCGCTGGAAAGCGCTGCCATATATAGCCTCATCAGTTCGGCATCGTTGCAAAAACAGTGGCGCCGTCGCCCTTTTCG
TTCCCCACATCATAGCGCTTCTCTGACGGCAATGGTCGGCGGTGGGTCTATCCCCGGACCGGGTGAGATTTCACTGGCAC
ACAATGGCATTCTGTTTCTTGATGAGTTGCCTGAGTTTGAGCGTCGCGTGCTGGATGCATTGAGAGAACCTATTGAATCT
GGTGAAATACATATCTCGCGCACGCGCGCCAAAATAAGCTATCCCGCGCAGTTTCAACTGGTCGCTGCGATGAACCCCAG
CCCCACGGGGCATTATCAGGGCAACCATAACCGCTGTACGCCAGAGCAGACGCTGCGCTATCTGGGAAAGCTTTCCGGCC
CATTCCTCGACCGTTTCGATTTATCCCTCGAAATCCCCCTCCCGCCGCCGGGCCTGCTCAGGCAGACGGGCATAACGGGT
GAGAGCTCAGTAAAAGTGCGCGAGCGGGTGATCGCTGCCCAGGCACGACAATACGCCCGTCAAAACAGGCTGAATGCTCG
GCTTGATAATGCCGGGATCCGGCAGTTTTGTTCGCTTAACAGTGAAGATGCAGGATGGCTTGAGGAGACGTTGACGCGCT
TTGGGCTGTCTATACGAGCGTGGCAACGTTTGCTAAAAGTGGCCAGAACCATTGCTGACGTGGAGGGATGTACTGACATT
GAGAGGAAACACTTGCAGGAGGCGCTGAGTTACCGCGCTATCGATCGTTTGCTGCTGCACCTGCAGAAGTTGCTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.35

100

0.587
  comM Glaesserella parasuis strain SC1401

58.383

100

0.585
  comM Vibrio campbellii strain DS40M4

58.648

99.407

0.583
  comM Vibrio cholerae strain A1552

58.052

99.407

0.577
  comM Legionella pneumophila str. Paris

50.302

98.221

0.494
  comM Legionella pneumophila strain ERS1305867

50.302

98.221

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.787

100

0.439