Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HV155_RS01560 Genome accession   NZ_CP056727
Coordinates   325729..326253 (+) Length   174 a.a.
NCBI ID   WP_045620928.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain RHBSTW-00316     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 320729..331253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV155_RS01540 (HV155_01540) aphA 321053..321766 (+) 714 WP_003860292.1 acid phosphatase AphA -
  HV155_RS01545 (HV155_01545) - 321879..322295 (+) 417 WP_023305263.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HV155_RS01550 (HV155_01550) - 322298..322651 (+) 354 WP_006810472.1 MmcQ/YjbR family DNA-binding protein -
  HV155_RS01555 (HV155_01555) uvrA 322655..325477 (-) 2823 WP_003860287.1 excinuclease ABC subunit UvrA -
  HV155_RS01560 (HV155_01560) ssb 325729..326253 (+) 525 WP_045620928.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HV155_RS01565 (HV155_01565) - 326315..326596 (-) 282 WP_022646751.1 YjcB family protein -
  HV155_RS01570 (HV155_01570) - 327038..328438 (+) 1401 WP_181542231.1 sensor domain-containing diguanylate cyclase -
  HV155_RS01575 (HV155_01575) - 328704..330269 (+) 1566 WP_045620929.1 EAL domain-containing protein -
  HV155_RS01580 (HV155_01580) soxS 330276..330602 (-) 327 WP_045620930.1 superoxide response transcriptional regulator SoxS -
  HV155_RS01585 (HV155_01585) soxR 330701..331159 (+) 459 WP_003860275.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18680.68 Da        Isoelectric Point: 5.2456

>NTDB_id=460362 HV155_RS01560 WP_045620928.1 325729..326253(+) (ssb) [Enterobacter hormaechei strain RHBSTW-00316]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGSGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=460362 HV155_RS01560 WP_045620928.1 325729..326253(+) (ssb) [Enterobacter hormaechei strain RHBSTW-00316]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCTGAAGTGGCCGGTGAGTATCTGCGTAAGGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTCAACGTAGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGCAGTGGCGCACCGGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAACAGCCTCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCTCAGCAGCAGTCTGCTCCGGCACCG
TCTAACGAACCGCCAATGGACTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.787
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.477
  ssb Neisseria meningitidis MC58

45.251

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.368