Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HV228_RS22005 Genome accession   NZ_CP056716
Coordinates   4484071..4485591 (+) Length   506 a.a.
NCBI ID   WP_181594039.1    Uniprot ID   -
Organism   Enterobacter asburiae strain RHBSTW-00516     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4479071..4490591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV228_RS21985 (HV228_21985) ilvE 4480638..4481567 (-) 930 WP_023309654.1 branched-chain-amino-acid transaminase -
  HV228_RS21990 (HV228_21990) ilvM 4481586..4481849 (-) 264 WP_024907956.1 acetolactate synthase 2 small subunit -
  HV228_RS21995 (HV228_21995) ilvG 4481846..4483492 (-) 1647 WP_181594038.1 acetolactate synthase 2 catalytic subunit -
  HV228_RS22710 ilvX 4483495..4483545 (-) 51 WP_166792073.1 peptide IlvX -
  HV228_RS22000 (HV228_22000) ilvL 4483632..4483730 (-) 99 WP_001311244.1 ilv operon leader peptide -
  HV228_RS22005 (HV228_22005) comM 4484071..4485591 (+) 1521 WP_181594039.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HV228_RS22010 (HV228_22010) - 4485622..4485960 (-) 339 WP_023309658.1 DUF413 domain-containing protein -
  HV228_RS22015 (HV228_22015) hdfR 4486079..4486900 (+) 822 WP_023309659.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54989.87 Da        Isoelectric Point: 6.8203

>NTDB_id=460312 HV228_RS22005 WP_181594039.1 4484071..4485591(+) (comM) [Enterobacter asburiae strain RHBSTW-00516]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPSAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDDAIADAPDDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSTSLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLFRQTGITG
ESSAEVRERVIAAQTRQYARQNRLNARLDNAGIRQFCSLNVEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=460312 HV228_RS22005 WP_181594039.1 4484071..4485591(+) (comM) [Enterobacter asburiae strain RHBSTW-00516]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAAGCACCGCTTATTTCCGTCGAGGTTCATTTGAGCAA
TGGGCTACCCGGACTCACTCTTGTCGGGTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTTGCCCCCGCAGATCTGCCTAAAGAGGGGGGACGA
TACGATTTACCTATCGCAATTGCCCTTCTCGCGGCTTCTGAGCAGCTTAATACGACACGGCTAGGCTCGTATGAGTTCGT
TGGCGAACTCGCGCTTACAGGCGCGTTAAGAGGCGTTCCCAGTGCGATATCGGGAGCGCTGGAAGCCATACGAGCAGGAC
GGCAAATCATTGTCGCCAATGAAAACGCATCAGAAGTGAGTCTTATCGCCGAGAAGGGGTGTCTCATCGCAGGGCATTTA
CAGGAAGTTTGTGCCTGGCTGGAAGGGCGTCATGAACTGTCCGAGCCGGAGGAGTGTGATGATGCTATAGCGGATGCACC
AGATGATCTCAGCGAGATTATGGGACAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCTGCAGGTGGACACAATCTTC
TGTTAATTGGCCCGCCGGGTACGGGTAAAACCATGCTGGCAAGCAGGTTGAGTGGGTTACTTCCACCGCTCAATAATCAT
GAAGCGCTGGAAAGCGCCGCCATATATAGCCTTATCAGTTCGACGTCGTTGCAAAAACAGTGGCGCCGCCGTCCTTTTCG
TTCCCCGCATCATAGCGCTTCACTGACGGCAATGGTCGGCGGCGGGTCTATCCCCGGGCCGGGAGAGATCTCGCTGGCAC
ACAATGGCATTCTGTTTCTCGATGAGCTGCCTGAATTTGAGCGCCGCGTGCTGGATGCACTGAGAGAGCCCATTGAATCC
GGTGAGATACATATCTCACGCACGCGAGCCAAAATAAGCTACCCCGCACAGTTTCAGCTGGTCGCGGCGATGAATCCCAG
CCCGACGGGTCACTACCAGGGCAACCATAACCGCTGTACACCAGAACAAACGTTGCGTTATCTGGGTAAGTTATCCGGCC
CGTTCCTCGACCGTTTCGATTTATCCCTCGAAATCCCCCTTCCCCCGCCGGGTCTGTTCAGGCAAACGGGCATAACGGGT
GAAAGCTCAGCGGAGGTACGCGAACGGGTGATTGCAGCCCAGACGCGGCAGTACGCTCGTCAGAACAGGCTGAATGCACG
GCTGGATAATGCTGGGATCCGGCAGTTTTGTTCTCTTAACGTTGAGGATGCGGGCTGGCTCGAGGAAACGTTAACGCGGT
TCGGGCTGTCCATACGTGCGTGGCAGCGTTTGCTGAAGGTGGCCAGAACTATTGCTGACGTGGAGGGATGCACTGACATT
GAGAGAAAGCATTTGCAGGAGGCGCTGAGCTACCGCGCTATCGATCGTTTGCTGCTGCATTTGCAGAAATTGCTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

57.957

100

0.583
  comM Glaesserella parasuis strain SC1401

57.988

100

0.581
  comM Vibrio campbellii strain DS40M4

58.135

99.605

0.579
  comM Vibrio cholerae strain A1552

57.968

99.209

0.575
  comM Legionella pneumophila str. Paris

50.101

98.221

0.492
  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.811

100

0.441