Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HV139_RS21925 Genome accession   NZ_CP056644
Coordinates   4565816..4566349 (-) Length   177 a.a.
NCBI ID   WP_181517652.1    Uniprot ID   -
Organism   Citrobacter freundii strain RHBSTW-00267     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4560816..4571349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV139_RS21915 (HV139_21920) - 4562765..4563046 (+) 282 WP_096758704.1 YjcB family protein -
  HV139_RS21920 (HV139_21925) - 4563128..4565437 (-) 2310 WP_181629725.1 autotransporter outer membrane beta-barrel domain-containing protein -
  HV139_RS21925 (HV139_21930) ssb 4565816..4566349 (-) 534 WP_181517652.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HV139_RS21930 (HV139_21935) uvrA 4566601..4569423 (+) 2823 WP_181629728.1 excinuclease ABC subunit UvrA -
  HV139_RS21935 (HV139_21940) - 4569521..4569877 (-) 357 WP_096758708.1 MmcQ/YjbR family DNA-binding protein -
  HV139_RS21940 (HV139_21945) aphA 4570005..4570718 (-) 714 WP_117343604.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18804.81 Da        Isoelectric Point: 5.2456

>NTDB_id=460064 HV139_RS21925 WP_181517652.1 4565816..4566349(-) (ssb) [Citrobacter freundii strain RHBSTW-00267]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGNAGGGQQGGWGQPQQPQGGNQFSGGAQSRPQQSTP
AAPSNEPPIDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=460064 HV139_RS21925 WP_181517652.1 4565816..4566349(-) (ssb) [Citrobacter freundii strain RHBSTW-00267]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGTGTTGTGCTGTTTGGCAAACTGGCGGAAGTCGCCAGCGAATATCTGCGCAAAGGTTCTCAGGTCTACATT
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCAGGTGTCGAGAAGTACACGACTGAAGTTGTTGTGAACGTCGG
CGGCACCATGCAAATGCTGGGTGGTCGTCAGGGCGGCGGTGCACCGGCGGGCGGTAATGCAGGTGGCGGTCAACAGGGTG
GTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAACCAGTTCAGCGGCGGTGCACAGTCTCGTCCGCAGCAGTCCACTCCG
GCAGCGCCGTCTAACGAACCGCCAATCGACTTTGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.333

100

0.746
  ssb Glaesserella parasuis strain SC1401

55.376

100

0.582
  ssb Neisseria meningitidis MC58

45.946

100

0.48
  ssb Neisseria gonorrhoeae MS11

46.961

100

0.48
  ssbA Bacillus subtilis subsp. subtilis str. 168

38.333

100

0.39