Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HV189_RS23930 Genome accession   NZ_CP056552
Coordinates   4897719..4899239 (+) Length   506 a.a.
NCBI ID   WP_063858726.1    Uniprot ID   -
Organism   Enterobacter sp. RHBSTW-00422     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4892719..4904239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV189_RS23910 (HV189_23915) ilvE 4894287..4895216 (-) 930 WP_025202772.1 branched-chain-amino-acid transaminase -
  HV189_RS23915 (HV189_23920) ilvM 4895235..4895498 (-) 264 WP_014172166.1 acetolactate synthase 2 small subunit -
  HV189_RS23920 (HV189_23925) ilvG 4895495..4897141 (-) 1647 WP_050737771.1 acetolactate synthase 2 catalytic subunit -
  HV189_RS25705 ilvX 4897144..4897194 (-) 51 WP_193392055.1 peptide IlvX -
  HV189_RS23925 (HV189_23930) ilvL 4897281..4897379 (-) 99 WP_001311244.1 ilv operon leader peptide -
  HV189_RS23930 (HV189_23935) comM 4897719..4899239 (+) 1521 WP_063858726.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HV189_RS23935 (HV189_23940) - 4899267..4899605 (-) 339 WP_014172168.1 DUF413 domain-containing protein -
  HV189_RS23940 (HV189_23945) hdfR 4899724..4900545 (+) 822 WP_014172169.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54982.03 Da        Isoelectric Point: 7.3354

>NTDB_id=459859 HV189_RS23930 WP_063858726.1 4897719..4899239(+) (comM) [Enterobacter sp. RHBSTW-00422]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNSSRLGAYEFIGELALTGALRGVPGAISGALEVIRAGRQIIVANENGAEVSLIAERGCLLAGHL
QEVCACLEGQHVLSEPEESGDPLAESPDDLSDIYGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLNGLLPPLNNH
EALESAAIFSLVSSVSLQKQWRRRPFRSPHHSASLAAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRARAKISYPARFQLVAAMNPSPSGHYQGNHNRSTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLSQSSARG
ESTVEVRERVIAAQARQYMRQHKLNARLDNAEIRQFCPLKTEDSCWLEDTLTRFGLSIRAWQRLIKVARTIADVEKCPDI
ERRHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=459859 HV189_RS23930 WP_063858726.1 4897719..4899239(+) (comM) [Enterobacter sp. RHBSTW-00422]
ATGTCACTGTCAGTTGTTTATACCCGAGCGGCCATTGGAGTAAAAGCACCGCTTATTTCGGTAGAAGTTCATCTCAGCAA
CGGGCTGCCCGGGCTGACGCTGGTTGGATTGCCGGAGACCACGGTAAAGGAAGCCAGAGATCGGGTGCGCAGTGCGATTA
TTAATAGCGGTTATACCTTTCCGGCAAAGAAAATCACCATCAATCTTGCGCCTGCAGACTTGCCTAAAGAGGGAGGGCGA
TATGATTTACCTATCGCTATAGCGCTCCTCGCCGCCTCTGAGCAGCTTAACAGCAGCAGACTAGGCGCATATGAGTTCAT
CGGTGAACTGGCGCTCACAGGCGCGCTGAGGGGCGTTCCTGGTGCCATCTCGGGTGCGCTGGAGGTCATTCGCGCAGGTC
GACAAATCATTGTTGCCAATGAAAATGGTGCAGAAGTGAGCCTGATAGCCGAGAGAGGATGTCTGCTAGCCGGGCATTTA
CAGGAAGTGTGCGCGTGTCTTGAGGGGCAACATGTGCTGTCAGAGCCGGAAGAATCAGGCGATCCCCTGGCAGAAAGCCC
GGACGATCTGAGCGATATTTACGGCCAGGAGCAGGGGAAGCGGGCGCTGGAGATCACCGCTGCCGGCGGACATAACCTGT
TGTTGATTGGCCCACCGGGTACAGGAAAAACGATGCTGGCAAGCAGGTTGAATGGTTTACTGCCTCCACTTAATAACCAT
GAAGCGCTGGAAAGCGCGGCGATATTTAGTCTGGTGAGTTCAGTGTCATTGCAAAAACAGTGGCGACGTCGCCCGTTTCG
CTCTCCGCACCACAGTGCCTCACTGGCGGCCATGGTCGGCGGTGGCTCCATACCAGGGCCGGGAGAGATCTCTCTGGCGC
ACAACGGCATCCTGTTTCTGGATGAACTGCCTGAATTTGAACGCCGCGTTCTGGATGCGCTGAGGGAGCCCATCGAATCG
GGTGAGATCCATATCTCCCGTGCACGCGCCAAAATAAGCTATCCCGCGCGGTTCCAGCTGGTAGCGGCAATGAACCCCAG
CCCATCGGGCCATTATCAGGGAAACCACAATCGCTCCACGCCTGAACAGACGCTGCGCTACCTGGGGAAGTTATCTGGTC
CTTTCCTGGATCGTTTCGATTTGTCGCTGGAAATCCCCTTGCCTCCTCCCGGCCTGCTCAGCCAGAGCAGCGCCAGAGGA
GAGAGTACGGTGGAGGTTCGCGAGCGGGTTATCGCCGCGCAGGCCCGGCAGTATATGCGTCAACATAAGCTGAATGCCCG
TCTGGATAACGCTGAGATTCGGCAGTTTTGTCCTCTTAAGACTGAAGATTCATGCTGGCTGGAGGATACGTTGACGCGCT
TTGGGCTTTCCATTCGCGCATGGCAGCGTCTTATAAAAGTCGCCCGCACCATCGCCGATGTGGAAAAGTGCCCTGACATT
GAGAGGCGGCATCTGCAGGAAGCGTTAAGCTATCGTGCGATCGATCGCTTGCTCCTGCACCTGCAAAAGTTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

59.96

99.209

0.595
  comM Vibrio campbellii strain DS40M4

59.722

99.605

0.595
  comM Glaesserella parasuis strain SC1401

58.383

100

0.585
  comM Haemophilus influenzae Rd KW20

57.564

100

0.579
  comM Legionella pneumophila str. Paris

49.296

98.221

0.484
  comM Legionella pneumophila strain ERS1305867

49.296

98.221

0.484
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.787

100

0.439