Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsE   Type   Machinery gene
Locus tag   JMJ69_RS01870 Genome accession   NZ_CP068566
Coordinates   354341..355903 (+) Length   520 a.a.
NCBI ID   WP_002779312.1    Uniprot ID   A0ABN0EMS4
Organism   Campylobacter coli strain CC19DZ037     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 349341..360903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMJ69_RS01840 (JMJ69_01840) - 350685..350885 (-) 201 WP_002784549.1 hypothetical protein -
  JMJ69_RS01845 (JMJ69_01845) - 351037..351684 (+) 648 WP_002784551.1 S24 family peptidase -
  JMJ69_RS01850 (JMJ69_01850) - 351700..352407 (+) 708 WP_002784553.1 hypothetical protein -
  JMJ69_RS01855 (JMJ69_01855) - 352504..353166 (+) 663 Protein_359 pilus (MSHA type) biogenesis protein MshL -
  JMJ69_RS01860 (JMJ69_01860) ctsP 353159..353755 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  JMJ69_RS01865 (JMJ69_01865) ctsX 353752..354348 (+) 597 WP_002779313.1 CDC27 family protein Machinery gene
  JMJ69_RS01870 (JMJ69_01870) ctsE 354341..355903 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  JMJ69_RS01875 (JMJ69_01875) ctsF 355890..357065 (+) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  JMJ69_RS01880 (JMJ69_01880) - 357062..357826 (-) 765 WP_002784060.1 TSUP family transporter -
  JMJ69_RS01885 (JMJ69_01885) - 357829..358593 (-) 765 WP_002781156.1 TIGR02757 family protein -
  JMJ69_RS01890 (JMJ69_01890) flgK 358610..360436 (-) 1827 WP_002784059.1 flagellar hook-associated protein FlgK -
  JMJ69_RS01895 (JMJ69_01895) - 360446..360880 (-) 435 WP_002779263.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 520 a.a.        Molecular weight: 59828.44 Da        Isoelectric Point: 5.6204

>NTDB_id=459767 JMJ69_RS01870 WP_002779312.1 354341..355903(+) (ctsE) [Campylobacter coli strain CC19DZ037]
MIERFLFEDYINGKITLEQIDREHKIDSEIFLKALASDKNISYSTLEELDLSLGEKFPCSFLFKFKILPILSKENTLHIA
SSKPCSLELLDEIRIFYEVKNIEVLIASEFKIMKFLYKLQVREKLKNLSTNLRLEWKENRSQDEQSCISQIFDFILDEIL
EFNPSDIHIEARENDTLIRFRVDGILREFACLEKDIYEALVFHIKFLSQLNVAESRKAQDGNFELKIKENRYDFRISSLP
LQNGESIVIRILKHNEEILDLENLNLGEKNLTILKKALYNPYGMILLTGPTGSGKSTSLYACLNELKSIEKKIISVEDPI
EYKMPLIQQILLNPKAGLEFNNALRAILRQDPDIIMVGEIRDEESLDIAIKASLTGHLLLSTLHTNNAISTIDRLIDMSA
KPYLIASALRLVIAQRLVRKLCPKCKQKSTKVYEIKGDFFEAKGCEYCHHSGYQGRELISECLYIDEEIAQVIREGGYKN
KILELAKVKGFQSMFEQGLQKAKEGITSIDELLRVLNEAL

Nucleotide


Download         Length: 1563 bp        

>NTDB_id=459767 JMJ69_RS01870 WP_002779312.1 354341..355903(+) (ctsE) [Campylobacter coli strain CC19DZ037]
ATGATTGAGCGATTTTTATTTGAAGATTATATTAATGGTAAAATCACTCTTGAGCAAATTGATCGTGAGCATAAAATCGA
TAGTGAAATTTTTCTAAAAGCTTTGGCTAGTGATAAAAATATTTCTTATTCTACTTTAGAGGAACTTGATCTTAGTTTGG
GTGAAAAATTTCCATGTAGTTTTCTTTTTAAATTTAAAATCTTGCCCATTTTAAGTAAAGAAAATACACTTCATATAGCA
AGCTCCAAACCTTGTTCTTTAGAGCTTTTAGATGAGATTAGAATTTTTTATGAAGTTAAGAATATAGAAGTTTTGATCGC
AAGCGAATTTAAGATTATGAAATTTTTATATAAACTTCAAGTTAGAGAAAAACTTAAAAATTTAAGCACCAATCTTAGAT
TAGAATGGAAAGAAAATAGAAGTCAAGATGAGCAAAGTTGTATCAGTCAAATTTTTGATTTTATACTCGATGAAATTCTT
GAATTTAATCCTAGCGATATACATATAGAAGCAAGAGAAAATGATACTTTGATAAGATTTAGAGTAGATGGAATTTTACG
CGAATTTGCTTGTCTTGAAAAAGATATTTATGAGGCTTTGGTTTTTCATATTAAATTTTTATCGCAGCTTAATGTTGCAG
AATCAAGAAAGGCTCAAGATGGAAATTTTGAGCTTAAAATCAAAGAAAATAGATATGATTTTAGGATTTCATCTTTGCCT
TTGCAAAATGGCGAAAGCATTGTGATAAGAATTTTAAAACACAACGAAGAAATTTTGGATTTAGAAAATTTAAATTTGGG
CGAAAAAAATCTTACAATTCTAAAAAAAGCCCTATACAACCCTTATGGAATGATTTTACTAACAGGTCCTACAGGAAGTG
GAAAAAGTACAAGTTTATATGCTTGTTTAAATGAGCTAAAAAGCATAGAAAAGAAAATAATTTCTGTGGAAGATCCTATA
GAATATAAAATGCCTTTAATTCAGCAAATTTTGCTAAATCCAAAAGCAGGACTTGAATTTAATAATGCCCTAAGAGCCAT
TTTAAGACAAGATCCTGATATTATCATGGTAGGAGAAATCAGAGATGAGGAGAGCCTTGATATAGCGATTAAGGCTTCCT
TAACGGGGCACTTGCTTTTAAGTACTTTGCATACAAATAATGCCATTTCTACCATAGATAGATTAATTGACATGAGTGCA
AAGCCTTATTTGATCGCTTCTGCTTTAAGGCTTGTCATTGCCCAGCGTTTAGTGCGCAAGCTTTGTCCTAAATGCAAGCA
AAAAAGCACTAAGGTTTATGAAATAAAAGGTGATTTTTTTGAAGCTAAAGGCTGCGAGTATTGTCATCATAGTGGATATC
AAGGTAGAGAACTCATCAGTGAGTGTTTATATATCGATGAGGAAATAGCTCAAGTTATTAGAGAGGGTGGTTATAAAAAT
AAAATTCTAGAGCTTGCTAAAGTAAAGGGTTTTCAAAGTATGTTTGAGCAAGGTTTGCAAAAAGCAAAAGAGGGTATAAC
TAGCATAGATGAGCTTTTAAGGGTACTTAATGAAGCTTTATGA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(46-123)

Type II/IV secretion system protein (T2SSE)

(155-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsE Campylobacter jejuni subsp. jejuni 81-176

67.188

98.462

0.662
  pilB Acinetobacter baylyi ADP1

35.536

100

0.383
  pilB Legionella pneumophila strain ERS1305867

40.412

93.269

0.377