Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   JMJ69_RS01860 Genome accession   NZ_CP068566
Coordinates   353159..353755 (+) Length   198 a.a.
NCBI ID   WP_002779314.1    Uniprot ID   A0ABN0EMS5
Organism   Campylobacter coli strain CC19DZ037     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 348159..358755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMJ69_RS01835 (JMJ69_01835) - 348612..350684 (-) 2073 WP_212202772.1 DDE-type integrase/transposase/recombinase -
  JMJ69_RS01840 (JMJ69_01840) - 350685..350885 (-) 201 WP_002784549.1 hypothetical protein -
  JMJ69_RS01845 (JMJ69_01845) - 351037..351684 (+) 648 WP_002784551.1 S24 family peptidase -
  JMJ69_RS01850 (JMJ69_01850) - 351700..352407 (+) 708 WP_002784553.1 hypothetical protein -
  JMJ69_RS01855 (JMJ69_01855) - 352504..353166 (+) 663 Protein_359 pilus (MSHA type) biogenesis protein MshL -
  JMJ69_RS01860 (JMJ69_01860) ctsP 353159..353755 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  JMJ69_RS01865 (JMJ69_01865) ctsX 353752..354348 (+) 597 WP_002779313.1 CDC27 family protein Machinery gene
  JMJ69_RS01870 (JMJ69_01870) ctsE 354341..355903 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  JMJ69_RS01875 (JMJ69_01875) ctsF 355890..357065 (+) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  JMJ69_RS01880 (JMJ69_01880) - 357062..357826 (-) 765 WP_002784060.1 TSUP family transporter -
  JMJ69_RS01885 (JMJ69_01885) - 357829..358593 (-) 765 WP_002781156.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23633.42 Da        Isoelectric Point: 9.1569

>NTDB_id=459765 JMJ69_RS01860 WP_002779314.1 353159..353755(+) (ctsP) [Campylobacter coli strain CC19DZ037]
MNNIIAFRQECFDQINALLKNKALILLWGKSGSGKSVLLQRLALYHNEDFTNEIFTDEKDFHHFIQDKKRKIIILDEVGM
YSPNVLELIRIYSDEMSFVLSSHKKINLFEEEYFKSRFSAIFWLQKPDINELSNYIKMKFNQDFPQKSLKFLMKIYQGNL
RYLDKILQSFCELNTYLNNKKSQDYILRLSALEQGFLK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=459765 JMJ69_RS01860 WP_002779314.1 353159..353755(+) (ctsP) [Campylobacter coli strain CC19DZ037]
ATGAATAATATAATTGCTTTTAGACAAGAATGTTTTGATCAAATCAATGCCTTATTAAAAAATAAAGCTTTGATTTTACT
TTGGGGTAAAAGCGGTAGTGGGAAAAGTGTTTTATTGCAAAGACTTGCGCTATATCATAATGAAGATTTTACCAATGAAA
TTTTTACAGATGAAAAAGATTTTCATCATTTTATACAAGATAAAAAACGAAAAATTATCATACTAGATGAAGTGGGGATG
TATAGTCCTAATGTATTAGAACTAATTCGGATTTATAGCGATGAAATGAGTTTTGTGCTTAGCTCGCATAAAAAAATCAA
TCTTTTTGAAGAGGAGTATTTTAAAAGTCGTTTTAGTGCTATTTTTTGGCTTCAAAAACCTGATATAAATGAATTAAGCA
ATTATATCAAAATGAAATTTAATCAAGACTTTCCCCAAAAATCTTTAAAATTTCTTATGAAAATTTATCAAGGAAATTTA
AGGTATTTAGACAAGATACTTCAAAGTTTTTGCGAATTAAACACCTATTTAAACAATAAAAAAAGTCAAGATTATATTTT
AAGACTAAGCGCATTAGAACAGGGATTTTTAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

57.921

100

0.591