Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   JMJ69_RS01875 Genome accession   NZ_CP068566
Coordinates   355890..357065 (+) Length   391 a.a.
NCBI ID   WP_002781160.1    Uniprot ID   A0ABP2NQD9
Organism   Campylobacter coli strain CC19DZ037     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 350890..362065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMJ69_RS01845 (JMJ69_01845) - 351037..351684 (+) 648 WP_002784551.1 S24 family peptidase -
  JMJ69_RS01850 (JMJ69_01850) - 351700..352407 (+) 708 WP_002784553.1 hypothetical protein -
  JMJ69_RS01855 (JMJ69_01855) - 352504..353166 (+) 663 Protein_359 pilus (MSHA type) biogenesis protein MshL -
  JMJ69_RS01860 (JMJ69_01860) ctsP 353159..353755 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  JMJ69_RS01865 (JMJ69_01865) ctsX 353752..354348 (+) 597 WP_002779313.1 CDC27 family protein Machinery gene
  JMJ69_RS01870 (JMJ69_01870) ctsE 354341..355903 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  JMJ69_RS01875 (JMJ69_01875) ctsF 355890..357065 (+) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  JMJ69_RS01880 (JMJ69_01880) - 357062..357826 (-) 765 WP_002784060.1 TSUP family transporter -
  JMJ69_RS01885 (JMJ69_01885) - 357829..358593 (-) 765 WP_002781156.1 TIGR02757 family protein -
  JMJ69_RS01890 (JMJ69_01890) flgK 358610..360436 (-) 1827 WP_002784059.1 flagellar hook-associated protein FlgK -
  JMJ69_RS01895 (JMJ69_01895) - 360446..360880 (-) 435 WP_002779263.1 flagellar protein FlgN -
  JMJ69_RS01900 (JMJ69_01900) flgM 360923..361120 (-) 198 WP_002779262.1 flagellar biosynthesis anti-sigma factor FlgM -
  JMJ69_RS01905 (JMJ69_01905) - 361183..361524 (-) 342 WP_002779261.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 45518.35 Da        Isoelectric Point: 9.4461

>NTDB_id=459768 JMJ69_RS01875 WP_002781160.1 355890..357065(+) (ctsF) [Campylobacter coli strain CC19DZ037]
MKLYELEIKGKTKQTKHLRAKNLNEAQAKAIAKKWEILNIKEIQKASFKRLDDARFILFFQELSLLCEVGISIKDALKEL
DKIYSHKMIAKLCDNLNLGQNLSLAFENANFGLTHAELALIKTSQNTGKLSEIFMQISRLRQNNVENEQRVKKALRYPLI
VFLSVCAAFVLLMLFVVPNFKDLFEDLNLALPFITELIIYIYNFLDKYILLVFCLIALILFLTLFLYRKYYFFSYFCDSL
LLKLPLLSKFIIYQQNYSFFMIFSLLLKSGISLLEAFKLATLALNNKKVLLYYQEIRTFMDSGLEISHAFKKVDLFDPLV
FSMLSIAMKSSKLEFLSEEIAKYYKNKSENLMDKFLSFLEPIMTLWVAILVLFLALGIFLPIWELSSGVNF

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=459768 JMJ69_RS01875 WP_002781160.1 355890..357065(+) (ctsF) [Campylobacter coli strain CC19DZ037]
ATGAAGCTTTATGAGCTCGAGATTAAAGGCAAAACAAAACAGACAAAGCATTTAAGGGCTAAAAATTTAAACGAAGCTCA
AGCAAAAGCTATCGCTAAAAAATGGGAAATTTTAAATATCAAAGAGATACAAAAAGCAAGTTTTAAAAGATTAGATGATG
CAAGATTTATCCTTTTCTTTCAAGAATTATCTTTGCTTTGCGAAGTAGGAATCAGCATAAAAGATGCTTTAAAGGAGCTT
GATAAAATATATTCTCACAAGATGATTGCCAAGCTTTGCGATAATTTAAATTTAGGACAAAATTTAAGCCTTGCTTTTGA
AAATGCAAATTTTGGGCTTACTCATGCGGAATTAGCCCTTATTAAAACTTCCCAAAACACAGGAAAATTAAGTGAAATTT
TCATGCAAATTTCAAGATTAAGACAAAATAATGTAGAAAATGAACAAAGAGTCAAAAAAGCTTTAAGATATCCTTTGATT
GTTTTTTTAAGTGTGTGCGCGGCTTTTGTTTTACTCATGCTTTTTGTTGTGCCTAATTTTAAAGATTTATTTGAGGATTT
AAATTTAGCCTTACCCTTTATAACCGAGCTTATAATTTATATTTATAATTTTTTGGATAAGTATATTTTGCTTGTGTTTT
GTTTGATCGCACTTATTTTATTTCTTACTTTATTTTTGTATAGAAAATATTATTTCTTTTCATATTTTTGCGATAGCTTG
CTTTTAAAACTTCCTTTGTTGTCTAAATTTATTATTTATCAGCAAAATTATTCTTTTTTTATGATTTTCTCTTTACTTTT
AAAAAGCGGCATTTCTCTTTTGGAAGCTTTTAAATTAGCCACTTTGGCCTTAAATAATAAAAAGGTATTATTGTATTATC
AAGAAATTAGAACATTTATGGATTCTGGCCTTGAAATAAGTCACGCCTTTAAAAAAGTAGATCTTTTTGATCCTTTGGTT
TTTTCTATGTTGAGTATAGCTATGAAAAGTTCTAAGCTTGAGTTTTTGAGCGAGGAGATTGCGAAATATTATAAAAACAA
AAGTGAAAATTTAATGGACAAGTTTTTAAGCTTTTTAGAACCTATAATGACTTTATGGGTTGCGATTTTAGTATTGTTTT
TAGCACTTGGAATTTTTTTACCTATATGGGAACTTAGCTCAGGAGTAAATTTTTAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(262-381)

Type II secretion system (T2SS), protein F (T2SSF)

(59-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

60.66

100

0.611