Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HV242_RS22890 Genome accession   NZ_CP056393
Coordinates   4765007..4766527 (+) Length   506 a.a.
NCBI ID   WP_050737772.1    Uniprot ID   -
Organism   Enterobacter sp. RHBSTW-00593     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4760007..4771527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV242_RS22870 (HV242_22870) ilvE 4761575..4762504 (-) 930 WP_025202772.1 branched-chain-amino-acid transaminase -
  HV242_RS22875 (HV242_22875) ilvM 4762523..4762786 (-) 264 WP_014172166.1 acetolactate synthase 2 small subunit -
  HV242_RS22880 (HV242_22880) ilvG 4762783..4764429 (-) 1647 WP_050737771.1 acetolactate synthase 2 catalytic subunit -
  HV242_RS24190 ilvX 4764432..4764482 (-) 51 WP_193392055.1 peptide IlvX -
  HV242_RS22885 (HV242_22885) ilvL 4764569..4764667 (-) 99 WP_001311244.1 ilv operon leader peptide -
  HV242_RS22890 (HV242_22890) comM 4765007..4766527 (+) 1521 WP_050737772.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HV242_RS22895 (HV242_22895) - 4766555..4766893 (-) 339 WP_014172168.1 DUF413 domain-containing protein -
  HV242_RS22900 (HV242_22900) hdfR 4767012..4767833 (+) 822 WP_014172169.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54953.97 Da        Isoelectric Point: 7.3354

>NTDB_id=459444 HV242_RS22890 WP_050737772.1 4765007..4766527(+) (comM) [Enterobacter sp. RHBSTW-00593]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNSSRLGAYEFIGELALTGALRGVPGAISGALEAIRAGRQIIVANENGAEVSLIAERGCLLAGHL
QEVCACLEGQHVLSEPEESGDPLAESPDDLSDIYGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLNGLLPPLNNH
EALESAAIFSLVSSVSLQKQWRRRPFRSPHHSASLAAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRARAKISYPARFQLVAAMNPSPSGHYQGNHNRSTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLSQSSARG
ESTVEVRERVIAAQARQYMRQHKLNARLDNAEIRQFCPLKTEDSCWLEDTLTRFGLSIRAWQRLIKVARTIADVEKCPDI
ERRHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=459444 HV242_RS22890 WP_050737772.1 4765007..4766527(+) (comM) [Enterobacter sp. RHBSTW-00593]
ATGTCACTGTCAGTTGTTTATACCCGAGCGGCCATTGGAGTAAAAGCACCGCTTATTTCGGTAGAAGTTCATCTCAGCAA
CGGGCTGCCCGGGCTGACGCTGGTTGGATTGCCGGAGACCACGGTAAAGGAAGCCAGAGATCGGGTGCGCAGTGCGATTA
TTAATAGCGGTTATACCTTTCCGGCAAAGAAAATCACCATCAATCTTGCGCCTGCAGACTTGCCTAAAGAGGGAGGGCGA
TATGATTTACCTATCGCTATAGCGCTCCTCGCCGCCTCTGAGCAGCTTAACAGCAGCAGACTAGGCGCATATGAGTTCAT
CGGTGAACTGGCGCTCACAGGCGCGCTGAGGGGCGTTCCTGGTGCCATCTCGGGTGCGCTGGAGGCCATTCGCGCAGGTC
GACAAATCATTGTTGCCAATGAAAATGGTGCAGAAGTGAGCCTGATAGCCGAGAGAGGATGTCTGCTAGCCGGGCATTTA
CAGGAAGTGTGCGCGTGTCTTGAGGGGCAACATGTGCTGTCAGAGCCGGAAGAATCAGGCGATCCCCTGGCAGAAAGCCC
GGACGATCTGAGCGATATTTACGGCCAGGAGCAGGGGAAGCGGGCGCTGGAGATCACCGCTGCCGGCGGACATAACCTGT
TGTTGATTGGCCCACCGGGTACAGGAAAAACGATGCTGGCAAGCAGGTTGAATGGTTTACTGCCTCCACTTAATAACCAT
GAAGCGCTGGAAAGCGCGGCGATATTTAGTCTGGTGAGTTCAGTGTCATTGCAAAAACAGTGGCGACGTCGCCCGTTTCG
CTCTCCGCACCACAGTGCCTCACTGGCGGCCATGGTCGGCGGTGGCTCCATACCAGGGCCGGGAGAGATCTCTCTGGCGC
ACAACGGCATCCTGTTTCTGGATGAACTGCCTGAATTTGAACGCCGCGTTCTGGATGCGCTGAGGGAGCCCATCGAATCG
GGTGAGATCCATATCTCCCGTGCACGCGCCAAAATAAGCTATCCCGCGCGGTTCCAGCTGGTAGCGGCAATGAACCCCAG
CCCATCGGGCCATTATCAGGGAAACCACAATCGCTCCACGCCTGAACAGACGCTGCGCTACCTGGGGAAGTTATCTGGTC
CTTTCCTGGATCGTTTCGATTTGTCGCTGGAAATCCCCTTGCCTCCTCCCGGCCTGCTCAGCCAGAGCAGCGCCAGAGGA
GAGAGTACGGTGGAGGTTCGCGAGCGGGTTATCGCCGCGCAGGCCCGGCAGTATATGCGTCAACATAAGCTGAATGCCCG
TCTGGATAACGCTGAGATTCGGCAGTTTTGTCCTCTTAAGACTGAAGATTCATGCTGGCTGGAGGATACGTTGACGCGCT
TTGGGCTTTCCATTCGCGCATGGCAGCGTCTTATAAAAGTCGCCCGCACCATCGCCGATGTGGAAAAGTGCCCTGACATT
GAGAGGCGGCATCTGCAGGAAGCGTTAAGCTATCGTGCGATCGATCGCTTGCTCCTGCACCTGCAAAAGTTACTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

59.921

99.605

0.597
  comM Vibrio cholerae strain A1552

60.159

99.209

0.597
  comM Glaesserella parasuis strain SC1401

58.58

100

0.587
  comM Haemophilus influenzae Rd KW20

57.76

100

0.581
  comM Legionella pneumophila str. Paris

49.497

98.221

0.486
  comM Legionella pneumophila strain ERS1305867

49.497

98.221

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.984

100

0.441