Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HV265_RS23365 Genome accession   NZ_CP056350
Coordinates   4789710..4790237 (-) Length   175 a.a.
NCBI ID   WP_016155359.1    Uniprot ID   A0AAE2J7N6
Organism   Citrobacter sp. RHBSTW-00678     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 4787932..4788912 4789710..4790237 flank 798


Gene organization within MGE regions


Location: 4787932..4790237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV265_RS23355 (HV265_23365) - 4787932..4788912 (+) 981 WP_000019445.1 IS5-like element ISKpn26 family transposase -
  HV265_RS27440 - 4788894..4789073 (+) 180 WP_326926169.1 hypothetical protein -
  HV265_RS23360 (HV265_23370) - 4789362..4789643 (+) 282 WP_016155360.1 YjcB family protein -
  HV265_RS23365 (HV265_23375) ssb 4789710..4790237 (-) 528 WP_016155359.1 single-stranded DNA-binding protein SSB1 Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18749.79 Da        Isoelectric Point: 5.2456

>NTDB_id=459304 HV265_RS23365 WP_016155359.1 4789710..4790237(-) (ssb) [Citrobacter sp. RHBSTW-00678]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=459304 HV265_RS23365 WP_016155359.1 4789710..4790237(-) (ssb) [Citrobacter sp. RHBSTW-00678]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGTGTGGTGCTGTTCGGCAAACTGGCGGAAGTTGCCAGCGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGCGTAGAAAAGTACACCACTGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGTTGGGCGGTCGTCAGGGTGGTGGGGCTCCGGCAGGTGGCGGCCAGCAGCAGGGGGGTTGGGGTC
AGCCTCAGCAGCCGCAAGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCGGCTCCGGCAGCG
CCGTCTAATGAGCCGCCGATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.586

100

0.771
  ssb Glaesserella parasuis strain SC1401

57.609

100

0.606
  ssb Neisseria meningitidis MC58

48.333

100

0.497
  ssb Neisseria gonorrhoeae MS11

48.333

100

0.497
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.371