Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HV269_RS25390 Genome accession   NZ_CP056341
Coordinates   5275134..5276654 (+) Length   506 a.a.
NCBI ID   WP_137380384.1    Uniprot ID   -
Organism   Citrobacter sp. RHBSTW-00696     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5270134..5281654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV269_RS25370 (HV269_25370) - 5271689..5272618 (-) 930 WP_003829030.1 branched-chain amino acid transaminase -
  HV269_RS25375 (HV269_25375) ilvM 5272636..5272899 (-) 264 WP_003018017.1 acetolactate synthase 2 small subunit -
  HV269_RS25380 (HV269_25380) ilvG 5272896..5274542 (-) 1647 WP_047499578.1 acetolactate synthase 2 catalytic subunit -
  HV269_RS25385 (HV269_25385) ilvL 5274682..5274780 (-) 99 WP_001311244.1 ilv operon leader peptide -
  HV269_RS25390 (HV269_25390) comM 5275134..5276654 (+) 1521 WP_137380384.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HV269_RS25395 (HV269_25395) maoP 5276680..5277018 (-) 339 WP_003018025.1 macrodomain Ori organization protein MaoP -
  HV269_RS25400 (HV269_25400) hdfR 5277125..5277970 (+) 846 WP_087121878.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55178.17 Da        Isoelectric Point: 7.2884

>NTDB_id=459283 HV269_RS25390 WP_137380384.1 5275134..5276654(+) (comM) [Citrobacter sp. RHBSTW-00696]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTPNNLDTYELVGELALTGALRGVPGAISSATEAIRAGRRIIVAKENAAEVGLIHGEGCLIADHL
QTVCAFLEGKHDLDRPSSADFTPNALADDLSDVIGQEQGKRGLELTAAGGHNLLLIGPPGTGKTMLASRLRGLLPPLSND
EALESAAILSLIHSDTIQKQWKQRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQNAMKG
ENSATVKQRVMAARERQYQRQNKLNAHLDSQDIHKYCLLRSDDAQWLEETLAHLGLSIRAWLRLIKVARTIADIEQCDHI
SRQHLQEAVGYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=459283 HV269_RS25390 WP_137380384.1 5275134..5276654(+) (comM) [Citrobacter sp. RHBSTW-00696]
ATGTCACTATCGATTGTTCACACACGCGCCGCGCTAGGCGTGAATGCGCCAGCCATTACCATCGAGGTACATATCAGCAA
CGGCCTGCCTGGTTTAACCATGGTGGGGCTGCCCGAAACGACGGTGAAAGAGGCTCGCGATCGGGTACGCAGTGCGATTA
TTAATAGCGGTTATGAATTCCCGGCAAAGAAGATAACTATAAACCTCGCTCCGGCCGATCTCCCGAAAGAAGGGGGGCGA
TATGATTTACCTATCGCTGTTGCGCTTCTGGCCGCTTCTGAGCAGCTTACACCCAACAATCTCGACACCTACGAGCTGGT
AGGTGAATTAGCGCTTACAGGCGCGCTACGCGGCGTTCCCGGCGCGATATCAAGCGCAACCGAGGCCATTCGTGCAGGCA
GGCGAATTATTGTCGCAAAAGAGAATGCCGCTGAAGTTGGACTGATACACGGCGAAGGGTGCCTGATCGCCGATCACCTG
CAGACCGTATGCGCATTTCTCGAAGGTAAGCATGATTTAGACAGGCCATCATCCGCAGATTTTACGCCTAACGCATTAGC
TGATGATCTGAGCGATGTTATCGGCCAGGAACAGGGTAAACGCGGGCTGGAGCTTACCGCAGCAGGCGGCCACAATCTCT
TGCTCATCGGCCCGCCGGGTACGGGAAAGACTATGCTAGCCAGTCGACTCAGAGGGCTACTCCCTCCACTTAGCAACGAT
GAAGCGCTGGAAAGTGCCGCGATACTCAGTCTGATCCATTCCGACACGATACAAAAACAGTGGAAGCAGCGCCCTTTTCG
CTCGCCACATCACAGTGCTTCATTAACCGCCATGGTCGGTGGAGGCTCTATTCCTGCGCCAGGAGAGATCTCTTTGGCGC
ACAACGGCATACTGTTTCTGGATGAACTACCCGAGTTTGAGCGGCGCACGCTGGATGCACTGCGCGAACCCATCGAGTCC
GGGCAGATCCATCTATCCCGCACCAGAGCAAAAATAACCTATCCCGCACGCTTTCAACTCATAGCTGCGATGAATCCAAG
CCCGACGGGCCATTATCAGGGGAACCATAACCGCTGTACCCCAGAACAGACGCTGCGCTACCTAAATCGATTGTCAGGTC
CATTTCTTGACCGCTTCGACCTCTCCCTCGAAATTCCCTTACCGCCGCCCGGTATACTCAGCCAGAACGCGATGAAAGGG
GAAAATAGCGCAACGGTGAAGCAACGTGTTATGGCAGCGCGAGAGCGTCAGTATCAGCGGCAAAATAAGTTAAACGCACA
TCTGGACAGTCAGGATATCCATAAATACTGCCTACTGCGTAGCGACGATGCACAGTGGCTTGAAGAAACGCTCGCGCATC
TCGGATTGTCTATCCGCGCCTGGCTGCGCCTGATTAAGGTCGCTCGAACGATTGCGGATATCGAACAATGTGATCACATC
TCTCGCCAGCATTTACAGGAGGCCGTTGGGTACCGAGCGATAGACAGGTTACTCATTCATCTGCAGAAATTACTGACATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Haemophilus influenzae Rd KW20

57.534

100

0.581
  comM Glaesserella parasuis strain SC1401

57.564

100

0.579
  comM Vibrio campbellii strain DS40M4

57.738

99.605

0.575
  comM Legionella pneumophila str. Paris

47.485

98.221

0.466
  comM Legionella pneumophila strain ERS1305867

47.485

98.221

0.466
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.857

99.605

0.427