Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HV302_RS25685 Genome accession   NZ_CP056284
Coordinates   5109316..5110836 (+) Length   506 a.a.
NCBI ID   WP_181626751.1    Uniprot ID   -
Organism   Citrobacter sp. RHBSTW-00859     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5104316..5115836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV302_RS25665 (HV302_25595) - 5105871..5106800 (-) 930 WP_003829030.1 branched-chain amino acid transaminase -
  HV302_RS25670 (HV302_25600) ilvM 5106818..5107081 (-) 264 WP_003018017.1 acetolactate synthase 2 small subunit -
  HV302_RS25675 (HV302_25605) ilvG 5107078..5108724 (-) 1647 WP_016157831.1 acetolactate synthase 2 catalytic subunit -
  HV302_RS25680 (HV302_25610) ilvL 5108864..5108962 (-) 99 WP_001311244.1 ilv operon leader peptide -
  HV302_RS25685 (HV302_25615) comM 5109316..5110836 (+) 1521 WP_181626751.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HV302_RS25690 (HV302_25620) maoP 5110862..5111200 (-) 339 WP_003018025.1 macrodomain Ori organization protein MaoP -
  HV302_RS25695 (HV302_25625) hdfR 5111307..5112152 (+) 846 WP_085951100.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55174.22 Da        Isoelectric Point: 7.4728

>NTDB_id=459071 HV302_RS25685 WP_181626751.1 5109316..5110836(+) (comM) [Citrobacter sp. RHBSTW-00859]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTPHNLDTYELVGELALTGALRGVPGAISSATEAIRAGRRIIVAKENAAEVGLIHGEGCLIADHL
QTVCAFLEGKHDLDRPSSADFTPNALADDLSDVIGQEQGKRGLELTAAGGHNLLLIGPPGTGKTMLASRLRGLLPPLSND
EALESAAILSLIHSDTIKKQWKQRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQSAMKG
ENSATVKQRVMAARERQYQRQNKLNAHLDSQDIHKYCLLRSDDAQWLEETLAHLGLSIRAWLRLIKVARTIADIEQCDHI
SRQHLQEAVGYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=459071 HV302_RS25685 WP_181626751.1 5109316..5110836(+) (comM) [Citrobacter sp. RHBSTW-00859]
ATGTCACTATCGATTGTTCACACACGCGCCGCGCTAGGCGTGAATGCGCCAGCCATTACCATCGAGGTACATATCAGCAA
CGGCCTGCCTGGTTTAACCATGGTGGGGCTGCCCGAAACGACGGTGAAAGAGGCTCGCGATCGGGTACGCAGTGCGATTA
TTAATAGCGGTTATGAATTCCCGGCAAAGAAAATAACTATAAACCTCGCTCCGGCCGATCTCCCGAAAGAAGGGGGGCGA
TATGATTTACCTATCGCTGTTGCGCTTCTGGCCGCTTCTGAGCAGCTTACACCCCACAATCTCGACACCTACGAGCTGGT
AGGTGAATTAGCGCTTACAGGCGCGCTACGCGGCGTTCCCGGCGCGATATCAAGCGCAACCGAGGCCATTCGTGCAGGCA
GGCGAATTATTGTCGCAAAAGAGAATGCCGCTGAAGTTGGACTGATACACGGCGAAGGGTGCCTGATCGCCGATCACCTG
CAGACCGTATGCGCATTTCTCGAAGGTAAGCATGATTTAGACAGGCCATCATCCGCAGATTTTACGCCTAACGCATTAGC
TGATGATCTGAGCGATGTTATCGGCCAGGAACAGGGTAAACGCGGGCTGGAGCTTACCGCAGCAGGCGGCCACAATCTCT
TGCTCATCGGCCCGCCGGGTACGGGAAAGACTATGCTAGCCAGTCGACTCAGAGGGCTGCTCCCTCCACTTAGCAACGAT
GAAGCGCTGGAAAGTGCCGCGATACTCAGTCTGATCCATTCCGACACGATAAAAAAACAGTGGAAGCAACGCCCTTTTCG
CTCGCCACATCACAGTGCTTCATTAACCGCCATGGTCGGTGGAGGCTCTATTCCTGCGCCAGGAGAGATCTCTTTAGCGC
ACAACGGCATACTGTTTCTGGATGAACTACCCGAGTTTGAGCGGCGCACGCTGGATGCACTGCGCGAACCCATCGAGTCC
GGGCAGATCCATCTATCCCGCACCAGAGCAAAAATAACCTATCCCGCACGCTTTCAACTCATAGCTGCGATGAATCCAAG
CCCGACGGGCCATTATCAGGGGAACCATAACCGCTGTACCCCAGAACAGACGCTGCGCTACCTAAATCGATTGTCAGGTC
CATTTCTTGACCGCTTCGACCTCTCCCTCGAAATTCCCTTACCGCCGCCCGGTATACTCAGCCAGAGCGCGATGAAAGGG
GAAAATAGCGCAACGGTGAAGCAACGTGTTATGGCAGCGCGAGAGCGTCAGTATCAGCGGCAAAATAAGTTAAACGCACA
TCTGGACAGTCAGGATATTCATAAATACTGCCTACTGCGTAGCGACGATGCACAGTGGCTTGAAGAAACGCTCGCGCATC
TCGGATTGTCTATCCGCGCCTGGCTGCGCCTGATTAAGGTCGCTCGAACGATTGCGGATATCGAACAATGTGATCACATC
TCTCGCCAGCATTTACAGGAGGCCGTTGGGTACCGAGCGATAGACAGGTTACTCATTCATCTGCAGAAACTACTGACATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

57.534

100

0.581
  comM Vibrio cholerae strain A1552

58.367

99.209

0.579
  comM Glaesserella parasuis strain SC1401

57.367

100

0.577
  comM Vibrio campbellii strain DS40M4

57.738

99.605

0.575
  comM Legionella pneumophila str. Paris

47.284

98.221

0.464
  comM Legionella pneumophila strain ERS1305867

47.284

98.221

0.464
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.857

99.605

0.427