Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   I6J14_RS07515 Genome accession   NZ_CP068057
Coordinates   1504806..1505234 (-) Length   142 a.a.
NCBI ID   WP_115252504.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_1157     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1499806..1510234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J14_RS07480 (I6J14_07480) - 1500232..1500837 (-) 606 WP_236593264.1 CPBP family intramembrane glutamic endopeptidase -
  I6J14_RS07485 (I6J14_07485) - 1500993..1501199 (-) 207 WP_003049274.1 helix-turn-helix transcriptional regulator -
  I6J14_RS07490 (I6J14_07490) - 1501509..1502705 (-) 1197 WP_003049273.1 acetate kinase -
  I6J14_RS07495 (I6J14_07495) comGH 1502764..1503717 (-) 954 WP_115246884.1 class I SAM-dependent methyltransferase Machinery gene
  I6J14_RS07500 (I6J14_07500) comGG 1503780..1504103 (-) 324 WP_236593265.1 competence type IV pilus minor pilin ComGG -
  I6J14_RS07505 (I6J14_07505) comGF 1504132..1504572 (-) 441 WP_003049266.1 competence type IV pilus minor pilin ComGF Machinery gene
  I6J14_RS07510 (I6J14_07510) comGE 1504553..1504849 (-) 297 WP_003061797.1 competence type IV pilus minor pilin ComGE Machinery gene
  I6J14_RS07515 (I6J14_07515) comGD 1504806..1505234 (-) 429 WP_115252504.1 competence type IV pilus minor pilin ComGD Machinery gene
  I6J14_RS07520 (I6J14_07520) comGC 1505209..1505535 (-) 327 WP_115246891.1 competence type IV pilus major pilin ComGC Machinery gene
  I6J14_RS07525 (I6J14_07525) comGB 1505537..1506568 (-) 1032 WP_003049254.1 competence type IV pilus assembly protein ComGB Machinery gene
  I6J14_RS07530 (I6J14_07530) comGA 1506504..1507445 (-) 942 WP_003049251.1 competence type IV pilus ATPase ComGA Machinery gene
  I6J14_RS07535 (I6J14_07535) - 1507525..1507890 (-) 366 WP_003049248.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16423.87 Da        Isoelectric Point: 9.8758

>NTDB_id=458698 I6J14_RS07515 WP_115252504.1 1504806..1505234(-) (comGD) [Streptococcus dysgalactiae strain FDAARGOS_1157]
MKSPVLNLKAYTLLESLLTLSVTSFIVLGLSVPVTSSYRRVQEQLFFTRFEHFYRHQQKLAILEHDQRVLTISSKQMLAA
EEWLTIPESIRVKNSQQLVIDQMGGNHSLAKIIFETTDQRVTYQFYLGSGNYQKTSQSLHRS

Nucleotide


Download         Length: 429 bp        

>NTDB_id=458698 I6J14_RS07515 WP_115252504.1 1504806..1505234(-) (comGD) [Streptococcus dysgalactiae strain FDAARGOS_1157]
ATGAAAAGTCCAGTCTTAAACCTTAAAGCTTATACGCTGCTTGAAAGCTTATTAACGCTATCAGTAACAAGTTTTATTGT
CTTGGGGTTATCTGTGCCTGTGACAAGTAGTTATCGAAGGGTTCAGGAACAGCTTTTTTTCACTCGTTTTGAGCACTTTT
ATCGTCACCAACAAAAGTTGGCTATTTTGGAACATGATCAACGAGTTTTGACAATTTCTTCGAAACAAATGCTAGCGGCA
GAGGAGTGGTTAACAATACCTGAGTCGATAAGGGTTAAGAATAGTCAGCAATTGGTTATTGATCAAATGGGAGGAAATCA
TTCTTTAGCAAAGATAATATTCGAGACGACTGATCAACGGGTAACTTATCAATTTTATCTAGGGAGTGGAAATTATCAAA
AAACAAGTCAAAGCTTACATCGCTCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA140

44.961

90.845

0.408
  comGD Streptococcus mutans UA159

44.961

90.845

0.408
  comGD Streptococcus gordonii str. Challis substr. CH1

43.511

92.254

0.401
  comGD/cglD Streptococcus mitis NCTC 12261

38.849

97.887

0.38