Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV344_RS15000 Genome accession   NZ_CP056208
Coordinates   3082484..3083098 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain RHBSTW-00985     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3077484..3088098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV344_RS14985 (HV344_14985) helD 3077708..3079762 (-) 2055 WP_102191186.1 DNA helicase IV -
  HV344_RS14990 (HV344_14990) - 3079888..3080334 (+) 447 WP_003035892.1 YccF domain-containing protein -
  HV344_RS14995 (HV344_14995) yccS 3080353..3082506 (+) 2154 WP_032939270.1 YccS family putative transporter -
  HV344_RS15000 (HV344_15000) sxy/tfoX 3082484..3083098 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  HV344_RS15005 (HV344_15005) sulA 3083315..3083824 (+) 510 WP_032936288.1 SOS-induced cell division inhibitor SulA -
  HV344_RS15010 (HV344_15010) ompA 3084182..3085228 (+) 1047 WP_003035883.1 porin OmpA -
  HV344_RS15015 (HV344_15015) matP 3085318..3085770 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  HV344_RS15020 (HV344_15020) - 3085956..3087716 (+) 1761 WP_172750084.1 AAA family ATPase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=458697 HV344_RS15000 WP_003035889.1 3082484..3083098(-) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00985]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=458697 HV344_RS15000 WP_003035889.1 3082484..3083098(-) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00985]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGAGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGCATTAAAGATGAGGGGACTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686