Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   I6J14_RS00945 Genome accession   NZ_CP068057
Coordinates   188015..188977 (+) Length   320 a.a.
NCBI ID   WP_115252977.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_1157     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 183015..193977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J14_RS00925 (I6J14_00925) nagB 183785..184498 (+) 714 WP_003051540.1 glucosamine-6-phosphate deaminase -
  I6J14_RS00930 (I6J14_00930) - 184602..185318 (+) 717 WP_115246193.1 pseudouridine synthase -
  I6J14_RS00935 (I6J14_00935) - 185410..186573 (+) 1164 WP_115252978.1 MFS transporter -
  I6J14_RS00940 (I6J14_00940) - 186677..187824 (+) 1148 Protein_182 IS3 family transposase -
  I6J14_RS00945 (I6J14_00945) coiA 188015..188977 (+) 963 WP_115252977.1 competence protein CoiA family protein Machinery gene
  I6J14_RS00950 (I6J14_00950) pepF 188988..190790 (+) 1803 WP_003051527.1 oligoendopeptidase F Regulator
  I6J14_RS00955 (I6J14_00955) - 190978..191532 (+) 555 WP_003051524.1 NADPH-dependent FMN reductase -
  I6J14_RS00960 (I6J14_00960) - 191655..192197 (+) 543 WP_003051521.1 GNAT family N-acetyltransferase -
  I6J14_RS00965 (I6J14_00965) - 192197..192817 (+) 621 WP_003051518.1 HAD-IA family hydrolase -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 37567.85 Da        Isoelectric Point: 10.1318

>NTDB_id=458645 I6J14_RS00945 WP_115252977.1 188015..188977(+) (coiA) [Streptococcus dysgalactiae strain FDAARGOS_1157]
MLRVLTALTNENQVISLLAQPNPQKQPFRCPACGSPVRLRQGKIIRPHFAHITLANCHFQTENESQEHLHLKAKLYTSLV
KTEKVCVEKYLPELQQFPDLWVNDKLALEIQCSPLPIERLVARTQAYQKNGYEVRWLLGKKLWLKNRLTAFQKQCLYFSS
SLGFHLWELDTAAHLLRLKYLIHEDLFGKVSYLTKTISLDNNIMESLRIPYHQRKLCSYQKPMAKSLSIPIQRALLTKHS
KWLHRQERAYLAGYNLLMLPVEAFYSQWRPVQSATGFCQIKENLHDYDKSFKAYYKKEGNKKVQTLFSPQYYVKIVSNRK

Nucleotide


Download         Length: 963 bp        

>NTDB_id=458645 I6J14_RS00945 WP_115252977.1 188015..188977(+) (coiA) [Streptococcus dysgalactiae strain FDAARGOS_1157]
GTGTTGAGAGTATTAACAGCTTTAACCAATGAGAATCAGGTGATTTCTTTGCTAGCACAGCCTAATCCTCAGAAGCAACC
ATTTCGTTGTCCAGCTTGTGGATCCCCTGTTCGCTTGCGTCAGGGAAAAATTATACGCCCTCATTTTGCACACATCACAT
TAGCTAATTGTCATTTTCAAACAGAAAATGAGTCCCAAGAACATTTGCATTTGAAAGCAAAATTATATACAAGCCTGGTA
AAGACAGAAAAGGTTTGTGTGGAAAAGTATCTTCCTGAGTTACAACAATTTCCAGACCTTTGGGTGAATGATAAATTAGC
CTTAGAAATTCAGTGCAGCCCTTTACCAATTGAGCGTTTGGTGGCACGTACACAAGCCTATCAGAAAAATGGTTACGAGG
TTCGTTGGCTGTTGGGAAAGAAACTTTGGCTTAAAAATCGTTTAACGGCCTTCCAAAAACAATGTCTTTACTTTTCGTCT
AGTTTAGGCTTTCATTTGTGGGAGTTGGATACAGCTGCACATCTGTTACGTCTAAAATACTTAATTCATGAAGATTTATT
TGGCAAAGTGAGTTACCTAACCAAAACCATTTCTTTGGATAACAATATCATGGAAAGTTTGCGGATTCCTTATCACCAAA
GGAAGCTCTGTTCTTACCAAAAACCTATGGCCAAATCTCTTTCGATACCCATTCAAAGGGCTTTATTAACGAAGCATTCT
AAATGGTTACATCGTCAGGAAAGAGCCTATTTAGCTGGCTATAATTTACTCATGTTGCCAGTAGAGGCCTTCTATTCTCA
ATGGCGCCCCGTACAGTCGGCTACTGGTTTTTGTCAAATCAAAGAGAATCTCCATGATTATGATAAGAGTTTTAAAGCTT
ATTACAAAAAAGAAGGGAATAAAAAGGTGCAAACGCTTTTTTCGCCTCAATATTATGTTAAAATAGTTAGTAATAGAAAA
TGA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(9-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

42.903

96.875

0.416
  coiA Streptococcus pneumoniae Rx1

41.613

96.875

0.403
  coiA Streptococcus pneumoniae D39

41.613

96.875

0.403
  coiA Streptococcus pneumoniae R6

41.613

96.875

0.403
  coiA Streptococcus pneumoniae TIGR4

41.613

96.875

0.403
  coiA Lactococcus lactis subsp. cremoris KW2

38.344

100

0.391