Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   I6J14_RS00950 Genome accession   NZ_CP068057
Coordinates   188988..190790 (+) Length   600 a.a.
NCBI ID   WP_003051527.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_1157     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 183988..195790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J14_RS00930 (I6J14_00930) - 184602..185318 (+) 717 WP_115246193.1 pseudouridine synthase -
  I6J14_RS00935 (I6J14_00935) - 185410..186573 (+) 1164 WP_115252978.1 MFS transporter -
  I6J14_RS00940 (I6J14_00940) - 186677..187824 (+) 1148 Protein_182 IS3 family transposase -
  I6J14_RS00945 (I6J14_00945) coiA 188015..188977 (+) 963 WP_115252977.1 competence protein CoiA family protein Machinery gene
  I6J14_RS00950 (I6J14_00950) pepF 188988..190790 (+) 1803 WP_003051527.1 oligoendopeptidase F Regulator
  I6J14_RS00955 (I6J14_00955) - 190978..191532 (+) 555 WP_003051524.1 NADPH-dependent FMN reductase -
  I6J14_RS00960 (I6J14_00960) - 191655..192197 (+) 543 WP_003051521.1 GNAT family N-acetyltransferase -
  I6J14_RS00965 (I6J14_00965) - 192197..192817 (+) 621 WP_003051518.1 HAD-IA family hydrolase -
  I6J14_RS00970 (I6J14_00970) - 193149..194360 (+) 1212 WP_115246186.1 OFA family MFS transporter -
  I6J14_RS00975 (I6J14_00975) - 194412..195119 (+) 708 WP_115252976.1 O-methyltransferase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69209.03 Da        Isoelectric Point: 4.6827

>NTDB_id=458646 I6J14_RS00950 WP_003051527.1 188988..190790(+) (pepF) [Streptococcus dysgalactiae strain FDAARGOS_1157]
MTDNRSHLEEKYTWDLSTIFATDKDWEAEVSGLASEIDTAKDFAGHLLDSSANLLTITDTYLELARRVEKVYVYAHMKND
QDTTVAKYQEYQAKASGLYAKFSEVFSFYDPEVMALSQEDYQAFLVETPELKRYHHFFDKLFQTRDHVLSQAEEELLAGA
QEIFNGAEETFSILDNADIVFPVVKNDKGEDVELTHGNFISLMESKDRSVRQAAYEAMYSTYEQFQHTYAKILQTNVKVQ
NYKARVHKYDSARQAAMAANFIPEAVYDTLLETVNKHLPLLHRYLKLRQDVLGLDELKMYDVYTPLSETDLAIGYDEALE
KAEKVLAVFGKDYADRVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSLHSTFTRET
QPYVYGDYSIFLAEIASTTNENIMTEALLNEVQDEKERFAILNHYLDGFRGTVFRQTQFAEFEHAIHQADQKGEVLTSEY
LNQLYAELNEKYYGLSKDDNHFIQYEWARIPHFYYNYYVYQYATGFAAASYLADKIVHGTQDDIDHYLTYLKSGNSDYPL
EVIAKAGVDMAKGDYLDAAFKVFEERLTELEALVAKGAHR

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=458646 I6J14_RS00950 WP_003051527.1 188988..190790(+) (pepF) [Streptococcus dysgalactiae strain FDAARGOS_1157]
ATGACAGATAATCGTAGTCATTTAGAAGAAAAGTACACTTGGGATTTGAGCACTATTTTTGCAACAGATAAGGATTGGGA
AGCTGAAGTGAGTGGCTTAGCTAGTGAAATTGACACGGCTAAGGATTTTGCAGGTCATTTACTAGATTCTAGCGCTAATC
TGTTGACAATTACAGATACTTATTTAGAGTTGGCTCGTCGTGTTGAGAAAGTCTATGTTTATGCGCATATGAAAAATGAT
CAAGACACGACTGTTGCTAAATATCAAGAATATCAGGCTAAGGCTTCTGGCTTGTATGCTAAATTTAGCGAAGTGTTTTC
ATTCTATGACCCAGAAGTTATGGCATTGAGTCAGGAAGATTACCAAGCTTTTCTTGTGGAAACTCCTGAGTTAAAAAGAT
ATCATCATTTCTTTGACAAATTGTTCCAGACACGTGACCATGTGCTTAGTCAGGCTGAAGAGGAATTATTAGCAGGAGCC
CAAGAAATTTTCAACGGTGCTGAAGAAACCTTTAGCATTCTGGATAACGCTGATATTGTCTTTCCAGTAGTTAAAAATGA
TAAGGGGGAAGATGTTGAATTAACCCATGGTAACTTCATCAGTTTAATGGAATCTAAAGATCGTAGCGTTCGCCAAGCTG
CTTACGAGGCAATGTATAGCACTTATGAACAGTTCCAACACACTTATGCTAAAATCTTACAAACAAATGTTAAGGTTCAA
AATTACAAGGCGCGTGTTCATAAATACGATTCAGCACGTCAAGCTGCTATGGCTGCTAACTTTATTCCAGAAGCTGTTTA
CGACACTTTATTAGAAACAGTTAACAAACATTTACCACTTTTACACCGTTACTTGAAACTTCGCCAAGATGTTCTTGGTC
TAGATGAGTTGAAGATGTATGATGTTTACACACCATTATCTGAAACAGACCTAGCCATTGGTTATGATGAGGCTTTGGAA
AAAGCTGAGAAGGTTTTGGCTGTTTTTGGTAAGGATTATGCAGACCGAGTGCATCGTGCCTTTACAGAACGTTGGATTGA
TGTTCATGTCAATAAAGGGAAGCGCTCTGGAGCTTATTCAGGTGGTTCCTACGATACCAATGCCTTTATGCTATTAAACT
GGCAAGATACCTTAGACAATCTATACACTTTAGTTCATGAAACTGGGCACAGTTTGCATTCTACTTTCACTCGTGAAACA
CAGCCTTATGTGTATGGAGATTACAGTATTTTCTTGGCAGAAATTGCATCTACAACTAATGAAAACATCATGACAGAAGC
TCTCTTAAATGAGGTTCAAGATGAGAAAGAACGCTTTGCTATTTTAAACCATTACCTTGACGGTTTCCGTGGCACTGTTT
TCCGTCAAACCCAATTTGCTGAGTTTGAACACGCGATCCATCAAGCTGATCAAAAAGGAGAAGTGTTAACGAGCGAATAC
CTCAACCAATTGTATGCTGAGTTGAATGAAAAGTATTATGGGTTGAGTAAAGACGATAATCATTTTATTCAGTATGAATG
GGCACGTATTCCTCACTTCTATTACAATTATTATGTTTATCAGTATGCTACAGGCTTTGCAGCAGCAAGTTATTTAGCCG
ATAAGATTGTTCACGGAACGCAAGACGATATTGATCATTACTTGACCTACCTCAAGTCAGGAAATTCTGACTACCCACTT
GAGGTCATCGCTAAAGCGGGTGTTGATATGGCAAAAGGCGACTATCTTGACGCAGCCTTTAAAGTCTTCGAAGAACGTCT
AACAGAACTTGAAGCCCTTGTTGCAAAGGGAGCTCATCGCTAA

Domains

Predicted by InterProScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-580)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71.786

99.833

0.717