Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/celB   Type   Machinery gene
Locus tag   I6J14_RS00890 Genome accession   NZ_CP068057
Coordinates   175919..178162 (+) Length   747 a.a.
NCBI ID   WP_115252981.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_1157     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 170919..183162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J14_RS00865 (I6J14_00865) - 170953..172953 (+) 2001 Protein_168 potassium transporter Kup -
  I6J14_RS00870 (I6J14_00870) - 172977..173255 (-) 279 WP_003051573.1 GIY-YIG nuclease family protein -
  I6J14_RS00875 (I6J14_00875) - 173245..174021 (-) 777 WP_115253259.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  I6J14_RS00880 (I6J14_00880) - 174139..174879 (+) 741 WP_003051567.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  I6J14_RS00885 (I6J14_00885) comEA/celA/cilE 175276..175938 (+) 663 WP_115252982.1 helix-hairpin-helix domain-containing protein Machinery gene
  I6J14_RS00890 (I6J14_00890) comEC/celB 175919..178162 (+) 2244 WP_115252981.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  I6J14_RS00895 (I6J14_00895) holA 178244..179290 (+) 1047 WP_003051561.1 DNA polymerase III subunit delta -
  I6J14_RS00900 (I6J14_00900) sodA 179380..179985 (+) 606 WP_003051555.1 superoxide dismutase SodA -
  I6J14_RS11100 - 180152..181213 (+) 1062 Protein_176 serine hydrolase -
  I6J14_RS00915 (I6J14_00915) - 181333..182553 (-) 1221 WP_115252980.1 DUF3114 domain-containing protein -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 85246.92 Da        Isoelectric Point: 9.5926

>NTDB_id=458644 I6J14_RS00890 WP_115252981.1 175919..178162(+) (comEC/celB) [Streptococcus dysgalactiae strain FDAARGOS_1157]
MNYRWIKWSPLPPIQLAFLVMALYYQIYCPSWLTCLLSSCLGMLLLKQFPQQTLCKVVMILALFAAVFVYRKHQLRQQLE
TQPLQVSQVALVPDSIRINGDQLAVIGRHGNHSYQLFYRFKHQMEARFFQKEYRWIVMHAKIVLDKAETSRNFRGFNYQS
FLAYQGIYRIGKVEQVEQLKVVSPKSVGDYLSSLRRQAIVHCQQSFPKPMSHYLTGLLFGYLDKSFGEMTDYYSQLGIIH
LFALSGMQIGFFLTCFRRGLTLLAIPLEWIKWIELPFACLYAALTGYSISVIRSLLQAQLGHLGIKGLNNLVYAFLLVLL
WNAHALMTVGGVLTFSYAFILTVITFEELSGVKKHFVQVVTVSLGMLPFLLFYFASFNPMSMVLTGLLSYLFDALILPLL
CLVFCLSPLITLSGCNYLFLFLEKVIQFLGNTLNVSLVFGSPTSWHLLILVISFAILYDYRQIRQRVITCGLLIGLTLLS
VKYPLTNEVTFIDIGQGDSILVRDWTGKNLLIDVGGRLSFSSKEQWRQGHQTSNAQKTLIPYLKSRGIHTIDQLLVTHAD
TDHMGDIEAVAKAIRIKEILTSQGSLSQPSFVRRLRRLKCHVRVLAAGDQLPIMGSVLQVLYPWQLGDGKNNDSLVLYGR
LLNQTFLFTGDLEKEGENEIIERYPQLRVDYLKVGHHGSNTSSSAAFLDHIQPKVAFISAGKNNRYQHPHRETLTRLEDR
GISYYRTDIQGAIRLTGWLNWHIETAR

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=458644 I6J14_RS00890 WP_115252981.1 175919..178162(+) (comEC/celB) [Streptococcus dysgalactiae strain FDAARGOS_1157]
ATGAACTATCGTTGGATTAAGTGGTCTCCCTTGCCTCCCATTCAACTAGCCTTTTTGGTAATGGCTCTTTATTATCAGAT
CTATTGTCCTAGCTGGTTGACTTGCTTACTTAGCAGCTGTTTAGGAATGTTACTATTGAAGCAGTTTCCTCAACAGACCC
TCTGTAAGGTTGTTATGATTCTGGCCTTATTTGCTGCTGTCTTTGTTTATCGGAAACATCAGTTGAGACAGCAATTGGAA
ACACAACCTTTACAAGTGTCTCAGGTAGCATTGGTTCCGGATAGTATTCGAATTAATGGAGATCAATTAGCTGTTATTGG
GCGTCACGGTAATCATTCTTATCAGTTGTTTTATCGTTTTAAACATCAAATGGAAGCCCGATTTTTCCAAAAAGAGTACC
GTTGGATAGTGATGCATGCCAAAATAGTATTGGACAAGGCTGAGACTTCCCGAAATTTTAGAGGATTTAATTACCAATCT
TTTTTAGCCTATCAGGGAATTTACAGGATAGGAAAAGTGGAACAAGTAGAGCAGCTTAAAGTGGTTTCACCAAAGTCAGT
AGGTGATTATTTATCTTCTTTGAGGCGACAGGCTATTGTCCATTGTCAACAATCCTTTCCAAAGCCCATGTCTCATTATT
TGACGGGACTCCTTTTTGGCTATTTGGATAAGTCCTTTGGTGAGATGACAGATTATTATAGTCAGCTTGGTATCATTCAT
CTTTTTGCCCTATCAGGGATGCAGATTGGTTTCTTTTTAACCTGTTTTAGAAGAGGTTTGACGCTATTAGCTATTCCTCT
CGAATGGATTAAATGGATAGAACTTCCCTTTGCCTGTCTATATGCTGCGCTGACAGGTTACAGTATTTCTGTTATTCGAA
GCCTTCTGCAGGCCCAATTAGGTCATCTAGGCATAAAAGGTTTAAATAACCTGGTTTACGCTTTCTTACTTGTTCTTTTA
TGGAATGCTCATGCTTTGATGACTGTTGGTGGAGTACTAACATTTAGCTATGCGTTTATCTTAACTGTTATCACTTTTGA
GGAGTTATCGGGAGTTAAAAAGCATTTCGTTCAGGTCGTCACCGTTTCTTTAGGGATGTTACCTTTCTTGCTCTTTTATT
TTGCTAGTTTTAACCCCATGTCAATGGTGTTAACAGGGCTTTTGTCTTATCTCTTCGATGCTTTGATTTTGCCTCTTCTT
TGCTTGGTTTTCTGTTTGTCTCCTTTGATAACTCTCTCAGGATGTAATTATCTCTTTCTTTTCTTAGAAAAAGTCATTCA
ATTTCTTGGGAATACCCTCAATGTCTCCCTTGTTTTTGGAAGTCCGACCAGTTGGCACTTGCTTATCTTGGTGATTAGCT
TCGCTATTCTTTATGACTATCGGCAGATACGACAAAGAGTTATCACTTGCGGCTTGCTCATAGGCCTGACGCTTTTATCT
GTTAAATATCCTTTGACCAATGAAGTGACCTTTATCGACATTGGCCAGGGCGATAGTATTTTAGTGAGGGATTGGACAGG
AAAAAATCTCTTAATAGATGTAGGTGGGCGCCTTTCGTTTTCTTCAAAAGAGCAGTGGCGACAGGGGCACCAGACATCGA
ATGCTCAGAAAACCTTAATTCCTTACTTAAAAAGTAGAGGCATTCACACCATTGACCAATTACTAGTGACTCATGCGGAT
ACTGATCATATGGGGGATATAGAGGCGGTTGCCAAAGCTATTCGGATAAAGGAGATTTTGACTAGCCAAGGTAGTTTAAG
CCAGCCAAGCTTTGTTAGGCGGTTAAGGCGTTTAAAATGTCACGTTAGGGTTTTAGCAGCTGGAGACCAATTGCCTATTA
TGGGAAGTGTCTTACAGGTACTCTATCCTTGGCAATTAGGGGACGGGAAAAATAATGATTCTCTGGTTCTTTATGGTAGG
CTCCTCAATCAAACTTTTCTATTTACAGGTGATTTGGAAAAAGAGGGGGAAAACGAGATCATAGAACGTTATCCTCAACT
AAGAGTAGATTATTTAAAAGTAGGTCACCATGGATCAAATACCTCTTCTAGTGCAGCTTTTTTAGACCATATTCAGCCCA
AAGTGGCCTTTATTTCTGCTGGAAAAAATAACCGTTATCAGCATCCTCACAGAGAAACCCTAACCCGTTTGGAGGATAGG
GGAATTTCTTATTATCGCACGGATATTCAAGGAGCTATTCGGTTGACAGGGTGGCTAAACTGGCATATTGAGACTGCTCG
TTGA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(495-701)

Competence protein (Competence)

(217-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/celB Streptococcus mitis NCTC 12261

45.503

99.732

0.454
  comEC/celB Streptococcus mitis SK321

45.235

99.732

0.451
  comEC/celB Streptococcus pneumoniae Rx1

44.519

100

0.446
  comEC/celB Streptococcus pneumoniae D39

44.519

100

0.446
  comEC/celB Streptococcus pneumoniae R6

44.519

100

0.446
  comEC/celB Streptococcus pneumoniae TIGR4

44.578

100

0.446
  comEC Lactococcus lactis subsp. cremoris KW2

41.09

100

0.414