Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   I6J14_RS00885 Genome accession   NZ_CP068057
Coordinates   175276..175938 (+) Length   220 a.a.
NCBI ID   WP_115252982.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_1157     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 170276..180938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J14_RS00865 (I6J14_00865) - 170953..172953 (+) 2001 Protein_168 potassium transporter Kup -
  I6J14_RS00870 (I6J14_00870) - 172977..173255 (-) 279 WP_003051573.1 GIY-YIG nuclease family protein -
  I6J14_RS00875 (I6J14_00875) - 173245..174021 (-) 777 WP_115253259.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  I6J14_RS00880 (I6J14_00880) - 174139..174879 (+) 741 WP_003051567.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  I6J14_RS00885 (I6J14_00885) comEA/celA/cilE 175276..175938 (+) 663 WP_115252982.1 helix-hairpin-helix domain-containing protein Machinery gene
  I6J14_RS00890 (I6J14_00890) comEC/celB 175919..178162 (+) 2244 WP_115252981.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  I6J14_RS00895 (I6J14_00895) holA 178244..179290 (+) 1047 WP_003051561.1 DNA polymerase III subunit delta -
  I6J14_RS00900 (I6J14_00900) sodA 179380..179985 (+) 606 WP_003051555.1 superoxide dismutase SodA -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24275.73 Da        Isoelectric Point: 6.5062

>NTDB_id=458643 I6J14_RS00885 WP_115252982.1 175276..175938(+) (comEA/celA/cilE) [Streptococcus dysgalactiae strain FDAARGOS_1157]
MIDDLLTKGTNSLRKIYSLPRLIGVVLAIFLILTLSFVIWRKEQSQTKLPIVSTSSSIQQPASEEKKYPSEESNILVDLK
GAVQQEGVYKLRANSRVRDVIELAGGLTQEADRHAINFAEKLVDEQVVYVAKQGEDISVLPNASSASKANAEMSNSTKVN
INKANLEELQRISGIGVKRAQDILETRDSLGGFKTLDDLRQVSGIGEKTLEKLKHELSLD

Nucleotide


Download         Length: 663 bp        

>NTDB_id=458643 I6J14_RS00885 WP_115252982.1 175276..175938(+) (comEA/celA/cilE) [Streptococcus dysgalactiae strain FDAARGOS_1157]
ATGATAGATGACTTGTTAACTAAAGGAACAAATAGCTTGAGAAAGATTTATTCTCTGCCACGCTTGATTGGTGTTGTGTT
AGCCATTTTTCTGATACTAACCCTAAGTTTTGTTATCTGGAGAAAAGAGCAGAGCCAAACAAAACTTCCTATTGTATCAA
CTTCTTCTTCCATACAACAGCCAGCTAGTGAGGAAAAAAAGTATCCTTCAGAAGAGAGTAATATTCTAGTGGATTTGAAA
GGAGCCGTACAACAGGAGGGAGTTTATAAGCTCAGGGCTAATAGCCGTGTGCGCGATGTCATTGAATTAGCTGGGGGACT
TACTCAGGAAGCTGATAGACATGCTATTAATTTTGCAGAAAAACTGGTGGATGAGCAGGTTGTGTATGTGGCTAAGCAGG
GTGAAGACATTTCTGTCTTGCCAAATGCCTCCTCAGCAAGTAAAGCTAACGCAGAAATGTCTAACTCAACAAAGGTGAAT
ATCAATAAGGCAAATTTAGAGGAGTTACAACGTATTTCGGGCATTGGTGTAAAAAGAGCTCAGGATATTCTTGAGACGAG
AGACAGTCTAGGTGGCTTTAAAACGTTAGATGATCTTAGGCAGGTATCTGGAATTGGTGAAAAAACACTTGAGAAATTGA
AACATGAACTATCGTTGGATTAA

Domains

Predicted by InterProScan.

SLBB domain (SLBB)

(77-129)

Helix-hairpin-helix motif (HHH_3)

(155-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

42.105

95

0.4