Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   I6J14_RS00735 Genome accession   NZ_CP068057
Coordinates   143495..145156 (+) Length   553 a.a.
NCBI ID   WP_115252991.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_1157     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 138495..150156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J14_RS00705 (I6J14_00705) - 138795..139643 (+) 849 WP_115252996.1 NAD(P)H-hydrate dehydratase -
  I6J14_RS00710 (I6J14_00710) xseA 139794..141134 (+) 1341 WP_115252995.1 exodeoxyribonuclease VII large subunit -
  I6J14_RS00715 (I6J14_00715) - 141112..141327 (+) 216 WP_003051811.1 exodeoxyribonuclease VII small subunit -
  I6J14_RS00720 (I6J14_00720) - 141327..142199 (+) 873 WP_115252994.1 polyprenyl synthetase family protein -
  I6J14_RS00725 (I6J14_00725) - 142192..143019 (+) 828 WP_115252993.1 TlyA family RNA methyltransferase -
  I6J14_RS00730 (I6J14_00730) - 143006..143476 (+) 471 WP_115252992.1 arginine repressor -
  I6J14_RS00735 (I6J14_00735) recN 143495..145156 (+) 1662 WP_115252991.1 DNA repair protein RecN Machinery gene
  I6J14_RS00740 (I6J14_00740) - 145363..146259 (+) 897 WP_003051802.1 LPXTG cell wall anchor domain-containing protein -
  I6J14_RS00745 (I6J14_00745) - 146499..147338 (+) 840 WP_003051798.1 DegV family protein -
  I6J14_RS00750 (I6J14_00750) - 147331..148173 (+) 843 WP_003051796.1 SGNH/GDSL hydrolase family protein -
  I6J14_RS00755 (I6J14_00755) - 148151..148738 (+) 588 WP_003051794.1 YpmS family protein -
  I6J14_RS00760 (I6J14_00760) - 148837..149112 (+) 276 WP_003044261.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62348.55 Da        Isoelectric Point: 4.6325

>NTDB_id=458640 I6J14_RS00735 WP_115252991.1 143495..145156(+) (recN) [Streptococcus dysgalactiae strain FDAARGOS_1157]
MLLEISIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMTMMLGARASTEVIRHGANKAEIEGFFSVDANPALVAYL
EASGIAMEEDLVIRRDIFENGRSVSRINGQMVNLATLKEVGQFLVDIHGQHDQEELMRPQLHQQILDAFGDKAFEQLKEH
YQLIFDRYKSLRRQVIDKQKNEKEHKDRIDMLAFQIAEIETAALHRGEDERLGQERDRLLNHKKIADTLTNAYIMLDNED
FSSLSNIRSSMNDLLSIEQFDSEYKGMSTSISEAYYILEEVSKQLSDTIDQLDFDGGRLQEIEFRLDTLNSLTRKYGGDV
NDVLDYYDNIVKEYQLLTGDELSSGDLEAELKSLEKQLVAAASELSVSRHQLAEQLETDIKAELKELYMEKADFKVHFTT
SKFNRDGNESLEFYISTNPGEGFKPLVKVASGGELSRLMLAIKAAISKKEDKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
RHGQVLAISHLPQVIAIADYQYFISKESKEESTVSKVRLLTFEERVEEIARMLAGADMTEAALTQARELLAKH

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=458640 I6J14_RS00735 WP_115252991.1 143495..145156(+) (recN) [Streptococcus dysgalactiae strain FDAARGOS_1157]
ATGCTATTAGAAATTTCCATTAAAAATTTTGCCATTATTGAGGAAATCTCTCTGAATTTTGAAAATGGCATGACAGTTTT
GACGGGTGAAACAGGAGCTGGAAAGTCCATTATTATTGATGCCATGACTATGATGCTTGGTGCGCGTGCTAGTACAGAAG
TGATTCGCCACGGCGCTAATAAGGCAGAAATTGAAGGCTTTTTTTCCGTAGATGCCAATCCGGCACTGGTTGCATATTTA
GAAGCCTCTGGAATTGCAATGGAAGAAGATTTGGTAATCCGTCGAGATATTTTTGAAAATGGCAGAAGCGTGAGCCGTAT
TAATGGTCAGATGGTTAACTTAGCGACCTTAAAAGAGGTCGGGCAGTTTTTGGTAGATATTCATGGGCAACATGACCAAG
AAGAATTAATGAGACCACAGCTCCACCAGCAAATTTTGGATGCTTTTGGTGATAAGGCTTTTGAGCAATTGAAAGAGCAC
TATCAGCTTATTTTTGATCGCTATAAAAGCTTGCGTCGACAGGTTATTGATAAACAAAAAAATGAAAAAGAACATAAAGA
TCGTATCGACATGTTGGCTTTTCAGATAGCGGAGATTGAAACTGCAGCTTTGCATCGAGGAGAAGATGAGCGACTAGGTC
AAGAACGTGATCGTTTGTTAAATCATAAGAAAATTGCTGATACCTTAACCAATGCTTATATCATGCTAGATAATGAAGAT
TTTTCAAGCCTATCCAATATTCGCTCTAGCATGAATGACTTGCTATCAATTGAGCAGTTTGATTCTGAGTACAAGGGGAT
GTCGACTTCGATTTCTGAAGCCTATTATATTCTTGAAGAAGTGAGCAAGCAATTATCAGATACCATTGACCAACTGGATT
TTGATGGTGGGCGATTACAGGAAATTGAATTTCGCTTGGATACACTCAATAGCTTAACCCGTAAATACGGTGGCGATGTG
AATGATGTGCTTGACTACTACGATAATATCGTTAAAGAATACCAGCTATTAACAGGCGATGAGTTGTCTTCAGGGGACCT
AGAGGCAGAATTGAAAAGCTTAGAAAAACAATTGGTTGCTGCTGCTTCGGAGTTAAGTGTCTCTCGCCATCAATTGGCGG
AGCAACTAGAAACTGATATCAAAGCTGAACTTAAGGAACTTTATATGGAAAAAGCAGACTTCAAAGTTCACTTTACCACA
TCAAAATTCAATCGTGATGGTAATGAAAGCTTAGAATTTTACATCTCCACTAATCCAGGTGAAGGATTCAAGCCCCTTGT
CAAGGTGGCTTCGGGAGGTGAATTATCACGCTTGATGTTGGCCATCAAAGCAGCTATCTCTAAAAAAGAAGATAAAACGA
GTATTGTTTTTGATGAAGTAGATACAGGTGTTTCTGGTCGAGTTGCTCAAGCCATTGCCCAAAAAATTTATAAAATTGGG
CGACATGGGCAAGTTCTCGCTATTTCACACTTACCTCAAGTCATTGCCATTGCTGATTACCAGTATTTTATTTCTAAAGA
GAGTAAAGAAGAATCCACCGTTTCGAAGGTAAGGTTGTTAACTTTTGAAGAACGTGTGGAAGAAATTGCCAGAATGCTTG
CTGGTGCAGACATGACAGAAGCTGCTCTCACTCAGGCTCGTGAATTACTGGCCAAACATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.563

100

0.447