Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HV346_RS01405 Genome accession   NZ_CP056199
Coordinates   299905..300429 (+) Length   174 a.a.
NCBI ID   WP_181621853.1    Uniprot ID   A0A7L6CF56
Organism   Enterobacter sp. RHBSTW-00994     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 294905..305429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV346_RS01390 (HV346_01390) aphA 295645..296358 (+) 714 WP_181621850.1 acid phosphatase AphA -
  HV346_RS01395 (HV346_01395) - 296474..296827 (+) 354 WP_181621851.1 MmcQ/YjbR family DNA-binding protein -
  HV346_RS01400 (HV346_01400) uvrA 296831..299653 (-) 2823 WP_181621852.1 excinuclease ABC subunit UvrA -
  HV346_RS01405 (HV346_01405) ssb 299905..300429 (+) 525 WP_181621853.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HV346_RS01410 (HV346_01410) - 300487..300978 (-) 492 WP_181621854.1 hypothetical protein -
  HV346_RS01415 (HV346_01415) - 301121..301720 (-) 600 WP_181621855.1 EAL domain-containing protein -
  HV346_RS01420 (HV346_01420) - 301699..301893 (-) 195 WP_181621856.1 EAL domain-containing protein -
  HV346_RS23515 - 301855..301938 (+) 84 Protein_274 peptidoglycan endopeptidase -
  HV346_RS01425 (HV346_01425) parM 301978..302888 (+) 911 Protein_275 plasmid segregation protein ParM domain-containing protein -
  HV346_RS01430 (HV346_01430) - 302881..303360 (+) 480 WP_181621857.1 hypothetical protein -
  HV346_RS01435 (HV346_01435) wcaA 303486..304355 (-) 870 WP_249415139.1 colanic acid biosynthesis glycosyltransferase WcaA -
  HV346_RS23350 - 304428..304691 (-) 264 Protein_278 pentapeptide repeat-containing protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18607.63 Da        Isoelectric Point: 5.2456

>NTDB_id=458640 HV346_RS01405 WP_181621853.1 299905..300429(+) (ssb) [Enterobacter sp. RHBSTW-00994]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAAGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=458640 HV346_RS01405 WP_181621853.1 299905..300429(+) (ssb) [Enterobacter sp. RHBSTW-00994]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACTG
AATGGCATCGCGTTGTGCTGTTCGGCAAACTGGCCGAAGTGGCTGGTGAGTATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCCAGTTGCGTACCCGCAAATGGACCGATCAATCCGGTGCTGAGAAATACACCACGGAAGTGGTTGTGAACGTTGG
CGGAACCATGCAGATGCTGGGTGGCCGTCAGGGTGGTGGTGCTCCGGCAGCGGGTGGCCAGCAGCAGGGCGGTTGGGGTC
AACCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGTGGCGCGCAGTCTCGCCCACAGCAGCAGTCTGCTCCGGCGCCG
TCTAACGAGCCGCCAATGGACTTCGATGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L6CF56

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.787
  ssb Glaesserella parasuis strain SC1401

57.377

100

0.603
  ssb Neisseria meningitidis MC58

46.629

100

0.477
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.477
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374