Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HV268_RS22450 Genome accession   NZ_CP056168
Coordinates   4585966..4587486 (+) Length   506 a.a.
NCBI ID   WP_181530930.1    Uniprot ID   -
Organism   Enterobacter roggenkampii strain RHBSTW-00695     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4580966..4592486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV268_RS22430 (HV268_22435) ilvE 4582533..4583462 (-) 930 WP_021242827.1 branched-chain-amino-acid transaminase -
  HV268_RS22435 (HV268_22440) ilvM 4583481..4583744 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  HV268_RS22440 (HV268_22445) ilvG 4583741..4585387 (-) 1647 WP_123923182.1 acetolactate synthase 2 catalytic subunit -
  HV268_RS24630 ilvX 4585390..4585440 (-) 51 WP_166792073.1 peptide IlvX -
  HV268_RS22445 (HV268_22450) ilvL 4585527..4585625 (-) 99 WP_001311244.1 ilv operon leader peptide -
  HV268_RS22450 (HV268_22455) comM 4585966..4587486 (+) 1521 WP_181530930.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HV268_RS22455 (HV268_22460) - 4587516..4587854 (-) 339 WP_008501577.1 DUF413 domain-containing protein -
  HV268_RS22460 (HV268_22465) hdfR 4587973..4588794 (+) 822 WP_181530932.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54775.69 Da        Isoelectric Point: 7.2808

>NTDB_id=458544 HV268_RS22450 WP_181530930.1 4585966..4587486(+) (comM) [Enterobacter roggenkampii strain RHBSTW-00695]
MSLSVVYTRAALGVKAPLVSVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDEAVADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPQLNNH
EALESAAIYSLISSASLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGNYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSAKVRGRVIAAQARQYARQNRLNARLDNAGIRQFCSLNSEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=458544 HV268_RS22450 WP_181530930.1 4585966..4587486(+) (comM) [Enterobacter roggenkampii strain RHBSTW-00695]
ATGTCACTGTCAGTTGTTTATACACGTGCGGCTCTCGGGGTAAAGGCACCGCTTGTTTCCGTAGAGGTTCATTTGAGTAA
TGGGCTGCCCGGACTCACGCTTGTCGGGTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTTGCCCCCGCCGATCTGCCCAAAGAGGGCGGGCGA
TACGATTTACCTATCGCAATTGCGCTTCTCGCGGCTTCTGAGCAGCTTACTACGACCAGGCTAGGCTCGTACGAGTTCGT
GGGTGAACTCGCGCTCACAGGCGCATTGAGAGGCGTTCCCGGTGCGATATCGGGAGCGCTGGAAGCCATTCGTGCAGGGC
GGCAAATCATTGTCGCCAATGAAAACGCATCAGAAGTGAGTCTTATTGCCGAAAAGGGGTGTCTCATCGCCGGGCATCTT
CAGGAAGTATGTGCCTGGCTGGAAGGCCGACATGAACTGTCCGAGCCGGAGGAGTGCGACGAGGCTGTAGCAGATGCGCC
AGAAGATCTCAGTGAGATCATGGGACAGGAGCAAGGTAAACGGGCGCTGGAGATTACGGCTGCAGGTGGACACAATCTCC
TGCTGATTGGCCCGCCTGGTACAGGTAAAACGATGCTGGCGAGCAGGCTGAGCGGGTTGCTCCCGCAGCTCAATAATCAT
GAAGCGCTGGAAAGCGCTGCCATATATAGCCTCATCAGTTCGGCATCGTTGCAAAAACAGTGGCGCCGTCGCCCTTTTCG
TTCCCCACATCATAGCGCTTCACTGACGGCAATGGTCGGCGGTGGGTCTATCCCCGGACCGGGTGAGATTTCACTGGCAC
ACAATGGCATTCTGTTTCTTGATGAGTTGCCTGAGTTTGAGCGTCGCGTGCTGGATGCACTGAGAGAACCTATTGAATCT
GGTGAAATACATATCTCGCGCACGCGGGCCAAAATAAGCTATCCCGCGCAGTTTCAACTGGTCGCTGCGATGAACCCCAG
CCCCACGGGGAATTATCAGGGCAACCATAACCGCTGTACGCCAGAGCAGACGCTGCGCTATCTGGGAAAGCTTTCCGGCC
CATTCCTCGACCGTTTCGATTTGTCTCTCGAAATCCCCCTTCCGCCGCCGGGCCTGCTCAGGCAGACGGGCATAACGGGT
GAGAGCTCAGCAAAAGTGCGCGGGCGGGTGATCGCTGCCCAGGCACGACAATACGCCCGTCAAAACAGGCTGAATGCTCG
GCTTGATAATGCCGGGATCCGGCAGTTTTGTTCGCTTAATAGTGAAGATGCAGGATGGCTTGAGGAGACGTTGACGCGCT
TTGGGCTGTCTATACGTGCGTGGCAACGTTTGCTAAAAGTGGCCAGAACCATTGCTGACGTGGAGGGATGTACTGACATT
GAGAGGAAACACTTGCAGGAGGCGCTGAGTTACCGCGCTATCGATCGTTTGCTGCTGCACCTGCAGAAGTTGCTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.35

100

0.587
  comM Vibrio campbellii strain DS40M4

58.765

99.209

0.583
  comM Vibrio cholerae strain A1552

58.648

99.407

0.583
  comM Glaesserella parasuis strain SC1401

57.988

100

0.581
  comM Legionella pneumophila str. Paris

50.503

98.221

0.496
  comM Legionella pneumophila strain ERS1305867

50.503

98.221

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.787

100

0.439