Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   I6J15_RS00915 Genome accession   NZ_CP068056
Coordinates   182754..183416 (-) Length   220 a.a.
NCBI ID   WP_020916320.1    Uniprot ID   A0AB33AKC5
Organism   Streptococcus lutetiensis strain FDAARGOS_1158     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 177754..188416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J15_RS00910 (I6J15_00910) hpf 182129..182677 (-) 549 WP_058813685.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  I6J15_RS00915 (I6J15_00915) comFC/cflB 182754..183416 (-) 663 WP_020916320.1 ComF family protein Machinery gene
  I6J15_RS00920 (I6J15_00920) comFA/cflA 183416..184714 (-) 1299 WP_020916319.1 DEAD/DEAH box helicase Machinery gene
  I6J15_RS00925 (I6J15_00925) - 184769..185395 (+) 627 WP_111712652.1 YigZ family protein -
  I6J15_RS00930 (I6J15_00930) cysK 185495..186424 (+) 930 WP_020916317.1 cysteine synthase A -
  I6J15_RS00935 (I6J15_00935) - 186523..186879 (-) 357 WP_020916316.1 S1 RNA-binding domain-containing protein -
  I6J15_RS09300 (I6J15_00940) - 186879..188279 (-) 1401 WP_081048448.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25771.04 Da        Isoelectric Point: 9.4680

>NTDB_id=458540 I6J15_RS00915 WP_020916320.1 182754..183416(-) (comFC/cflB) [Streptococcus lutetiensis strain FDAARGOS_1158]
MKCLLCGQDFSEKEIFLGIISIRKNNYLVCPECHNIFEKIGDVHCPTCYRKDYKEQCEDCKKWAKENHKVSHRALYTYNE
AMKEYFSKYKFQGDAMLSNVFAKEVKQVLKNYKGYTIIPVPLSKERMKERQFNQITAILNAAKIPYHDILEKKDIKKQSE
KSRKERLTSDCPFRIKSDSQIPDKVLILDDIYTTGATLKGIYHLFYEKGAKIVKSLTIAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=458540 I6J15_RS00915 WP_020916320.1 182754..183416(-) (comFC/cflB) [Streptococcus lutetiensis strain FDAARGOS_1158]
ATGAAATGCCTCCTTTGTGGACAAGACTTTTCTGAGAAAGAAATATTTTTAGGAATTATTTCAATACGTAAAAATAATTA
TTTGGTTTGTCCAGAGTGCCATAATATCTTTGAAAAGATTGGTGATGTGCATTGTCCTACTTGTTATCGAAAAGACTACA
AAGAGCAATGTGAAGATTGTAAAAAGTGGGCAAAAGAAAATCACAAGGTTTCTCATCGAGCACTTTATACTTATAATGAA
GCCATGAAAGAGTATTTTTCTAAATACAAATTTCAAGGAGATGCTATGTTAAGTAATGTTTTTGCAAAAGAAGTCAAACA
AGTCTTGAAGAATTACAAAGGCTATACTATTATTCCAGTACCCTTAAGTAAAGAAAGGATGAAAGAAAGACAATTTAACC
AAATTACAGCCATTCTAAATGCTGCCAAAATTCCCTATCATGATATTTTAGAGAAGAAGGATATTAAAAAGCAATCTGAA
AAAAGTAGAAAAGAAAGATTGACGAGTGATTGCCCGTTTAGGATTAAATCAGACAGCCAGATACCAGATAAAGTATTAAT
TCTTGATGATATTTACACAACGGGAGCAACTTTAAAAGGAATTTATCACTTATTTTATGAAAAAGGAGCAAAGATTGTAA
AAAGTTTAACAATTGCACGGTAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AB33AKC5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

45

100

0.45
  comFC/cflB Streptococcus pneumoniae Rx1

45

100

0.45
  comFC/cflB Streptococcus pneumoniae D39

45

100

0.45
  comFC/cflB Streptococcus pneumoniae R6

45

100

0.45
  comFC/cflB Streptococcus mitis NCTC 12261

45

100

0.45
  comFC/cflB Streptococcus mitis SK321

43.636

100

0.436
  comFC Bacillus subtilis subsp. subtilis str. 168

35.242

100

0.364