Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HV326_RS01680 Genome accession   NZ_CP056132
Coordinates   350529..351053 (+) Length   174 a.a.
NCBI ID   WP_003860284.1    Uniprot ID   A0A9Q2WCG9
Organism   Enterobacter hormaechei strain RHBSTW-00916     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 345529..356053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV326_RS01660 (HV326_01665) aphA 345853..346566 (+) 714 WP_047052074.1 acid phosphatase AphA -
  HV326_RS01665 (HV326_01670) - 346679..347095 (+) 417 WP_047052076.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HV326_RS01670 (HV326_01675) - 347098..347451 (+) 354 WP_039272020.1 MmcQ/YjbR family DNA-binding protein -
  HV326_RS01675 (HV326_01680) uvrA 347455..350277 (-) 2823 WP_047052078.1 excinuclease ABC subunit UvrA -
  HV326_RS01680 (HV326_01685) ssb 350529..351053 (+) 525 WP_003860284.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HV326_RS01685 (HV326_01690) - 351115..351396 (-) 282 WP_003860282.1 YjcB family protein -
  HV326_RS01690 (HV326_01695) - 351840..353240 (+) 1401 WP_047052080.1 sensor domain-containing diguanylate cyclase -
  HV326_RS01695 (HV326_01700) - 353506..355071 (+) 1566 WP_047052082.1 EAL domain-containing protein -
  HV326_RS01700 (HV326_01705) soxS 355078..355404 (-) 327 WP_047052085.1 superoxide response transcriptional regulator SoxS -
  HV326_RS01705 (HV326_01710) soxR 355503..355961 (+) 459 WP_047052087.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18650.66 Da        Isoelectric Point: 5.2456

>NTDB_id=458350 HV326_RS01680 WP_003860284.1 350529..351053(+) (ssb) [Enterobacter hormaechei strain RHBSTW-00916]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=458350 HV326_RS01680 WP_003860284.1 350529..351053(+) (ssb) [Enterobacter hormaechei strain RHBSTW-00916]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCTGAAGTGGCCGGTGAGTATCTGCGTAAGGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGCACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCACCGGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCGGCACCG
TCTAACGAACCACCAATGGACTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.793
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374