Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HV328_RS01675 Genome accession   NZ_CP056129
Coordinates   356685..357209 (+) Length   174 a.a.
NCBI ID   WP_008503384.1    Uniprot ID   A0A156LWB5
Organism   Enterobacter roggenkampii strain RHBSTW-00925     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 346147..359463 356685..357209 within 0


Gene organization within MGE regions


Location: 346147..359463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV328_RS01610 (HV328_01610) - 346159..346752 (+) 594 WP_223861881.1 response regulator transcription factor -
  HV328_RS01615 (HV328_01615) - 346845..347129 (-) 285 WP_045335159.1 hypothetical protein -
  HV328_RS01620 (HV328_01620) - 347131..347535 (-) 405 WP_181519094.1 hypothetical protein -
  HV328_RS01625 (HV328_01625) - 347607..348143 (-) 537 WP_049107607.1 hypothetical protein -
  HV328_RS01630 (HV328_01630) - 348168..348650 (-) 483 WP_045417719.1 ribonuclease domain-containing protein -
  HV328_RS01635 (HV328_01635) - 348665..349114 (-) 450 WP_045335165.1 lysozyme -
  HV328_RS01640 (HV328_01640) - 349114..349716 (-) 603 WP_045417716.1 DUF2589 domain-containing protein -
  HV328_RS01645 (HV328_01645) - 349792..350349 (-) 558 WP_045335167.1 DUF2589 domain-containing protein -
  HV328_RS01650 (HV328_01650) tyrB 350556..351749 (+) 1194 WP_045417710.1 aromatic amino acid transaminase -
  HV328_RS01655 (HV328_01655) aphA 352009..352722 (+) 714 WP_181519095.1 acid phosphatase AphA -
  HV328_RS01660 (HV328_01660) - 352836..353252 (+) 417 WP_045417704.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HV328_RS01665 (HV328_01665) - 353255..353608 (+) 354 WP_008503382.1 MmcQ/YjbR family DNA-binding protein -
  HV328_RS01670 (HV328_01670) uvrA 353612..356434 (-) 2823 WP_047745038.1 excinuclease ABC subunit UvrA -
  HV328_RS01675 (HV328_01675) ssb 356685..357209 (+) 525 WP_008503384.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HV328_RS01680 (HV328_01680) - 357272..357553 (-) 282 WP_008503385.1 YjcB family protein -
  HV328_RS01685 (HV328_01685) - 358190..358438 (+) 249 Protein_329 CSS-motif domain-containing protein -
  HV328_RS01690 (HV328_01690) - 358495..359463 (-) 969 WP_023279773.1 IS5 family transposase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18593.60 Da        Isoelectric Point: 5.2456

>NTDB_id=458327 HV328_RS01675 WP_008503384.1 356685..357209(+) (ssb) [Enterobacter roggenkampii strain RHBSTW-00925]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=458327 HV328_RS01675 WP_008503384.1 356685..357209(+) (ssb) [Enterobacter roggenkampii strain RHBSTW-00925]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGTGCTGAGAAGTACACCACTGAAGTCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGTGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCTGCTCCGGCGCCG
TCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A156LWB5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.787
  ssb Glaesserella parasuis strain SC1401

57.377

100

0.603
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.368