Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HV349_RS21870 Genome accession   NZ_CP056126
Coordinates   4432495..4434015 (+) Length   506 a.a.
NCBI ID   WP_054829705.1    Uniprot ID   -
Organism   Enterobacter asburiae strain RHBSTW-01009     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4427495..4439015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV349_RS21850 (HV349_21850) ilvE 4429061..4429990 (-) 930 WP_023326297.1 branched-chain-amino-acid transaminase -
  HV349_RS21855 (HV349_21855) ilvM 4430009..4430272 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  HV349_RS21860 (HV349_21860) ilvG 4430269..4431915 (-) 1647 WP_059347431.1 acetolactate synthase 2 catalytic subunit -
  HV349_RS23020 ilvX 4431918..4431968 (-) 51 WP_166792073.1 peptide IlvX -
  HV349_RS21865 (HV349_21865) ilvL 4432055..4432153 (-) 99 WP_001311244.1 ilv operon leader peptide -
  HV349_RS21870 (HV349_21870) comM 4432495..4434015 (+) 1521 WP_054829705.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HV349_RS21875 (HV349_21875) - 4434045..4434383 (-) 339 WP_023309658.1 DUF413 domain-containing protein -
  HV349_RS21880 (HV349_21880) hdfR 4434502..4435323 (+) 822 WP_059347429.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54911.84 Da        Isoelectric Point: 6.8203

>NTDB_id=458322 HV349_RS21870 WP_054829705.1 4432495..4434015(+) (comM) [Enterobacter asburiae strain RHBSTW-01009]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDDAIADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSTSLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSAEVRERVIAAQTRQYARQNKLNARLDNAGIRQFCSLNVEDAGWLEDTLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=458322 HV349_RS21870 WP_054829705.1 4432495..4434015(+) (comM) [Enterobacter asburiae strain RHBSTW-01009]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAGGCACCGCTTATTTCCGTCGAGGTTCATTTGAGCAA
TGGGCTACCCGGACTCACGCTTGTCGGGTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTTGCCCCCGCCGATCTGCCTAAAGAGGGGGGACGA
TACGATTTACCTATCGCAATTGCCCTTCTCGCGGCTTCTGAGCAGCTTAATACGACACGGCTAGGCTCGTATGAGTTCGT
TGGCGAACTCGCGCTTACAGGCGCGTTAAGAGGCGTTCCCGGTGCGATATCGGGAGCGCTGGAAGCCATACGAGCAGGAC
GGCAAATCATTGTCGCCAATGAAAACGCATCAGAAGTGAGTCTTATCGCCGAGAAGGGGTGTCTCATCGCGGGGCATTTA
CAGGAAGTTTGTGCCTGGCTGGAAGGGCGTCATGAACTGTCCGAGCCGGAGGAGTGCGATGATGCTATAGCGGATGCTCC
AGAGGATCTCAGCGAGATTATGGGACAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCGGCAGGTGGACACAATCTTC
TGTTAATTGGCCCGCCGGGTACGGGTAAAACAATGCTGGCAAGCAGGTTAAGTGGGTTGCTTCCACCGCTCAATAATCAT
GAAGCGCTGGAAAGTGCTGCCATATATAGCCTTATCAGTTCGACGTCGTTGCAAAAACAGTGGCGGCGCCGTCCTTTTCG
TTCGCCGCATCATAGCGCTTCATTGACGGCAATGGTTGGCGGCGGGTCTATCCCCGGGCCAGGTGAGATCTCGCTGGCAC
ACAATGGCATTCTGTTTCTCGATGAGCTGCCTGAGTTTGAGCGCCGCGTGCTGGATGCACTAAGGGAACCCATTGAATCC
GGTGAGATACATATCTCACGCACGCGAGCGAAAATAAGCTATCCCGCGCAGTTTCAGTTAATCGCGGCGATGAATCCCAG
CCCGACGGGTCACTACCAGGGCAACCATAACCGCTGTACGCCAGAGCAGACGTTGCGCTATCTGGGTAAGTTATCCGGCC
CGTTCCTCGACCGTTTCGATTTATCCCTCGAAATCCCCCTTCCCCCGCCGGGTCTGCTCAGGCAAACGGGCATAACGGGT
GAAAGCTCAGCGGAGGTACGCGAGCGGGTGATTGCAGCCCAGACGCGGCAGTACGCTCGCCAGAACAAACTGAATGCACG
GCTGGATAATGCCGGGATTCGGCAGTTTTGTTCTCTTAACGTTGAAGATGCGGGATGGCTGGAAGATACGTTAACGCGGT
TCGGGCTGTCCATACGTGCGTGGCAACGTTTGCTGAAGGTGGCCAGAACTATTGCTGACGTGGAGGGATGCACTGACATT
GAGAGAAAGCATTTGCAGGAGGCGCTGAGCTACCGCGCTATCGATCGTTTGCTGCTGCATTTGCAGAAATTGCTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.35

100

0.587
  comM Glaesserella parasuis strain SC1401

58.58

100

0.587
  comM Vibrio campbellii strain DS40M4

58.532

99.605

0.583
  comM Vibrio cholerae strain A1552

58.367

99.209

0.579
  comM Legionella pneumophila str. Paris

50.101

98.221

0.492
  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.787

100

0.439