Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HWV01_RS00245 Genome accession   NZ_CP056122
Coordinates   60445..61962 (-) Length   505 a.a.
NCBI ID   WP_211673570.1    Uniprot ID   -
Organism   Moritella sp. 5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 55445..66962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWV01_RS00225 (HWV01_00225) - 55619..56608 (+) 990 WP_211673566.1 serine/threonine protein kinase -
  HWV01_RS00230 (HWV01_00230) - 56660..57283 (+) 624 WP_211673567.1 thiol:disulfide interchange protein DsbA/DsbL -
  HWV01_RS00235 (HWV01_00235) - 57355..59016 (-) 1662 WP_211673568.1 AMP-binding protein -
  HWV01_RS00240 (HWV01_00240) - 59468..60370 (-) 903 WP_211673569.1 acyltransferase -
  HWV01_RS00245 (HWV01_00245) comM 60445..61962 (-) 1518 WP_211673570.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HWV01_RS00250 (HWV01_00250) ilvG 62461..64119 (+) 1659 WP_211673571.1 acetolactate synthase 2 catalytic subunit -
  HWV01_RS00255 (HWV01_00255) ilvM 64106..64363 (+) 258 WP_305793994.1 acetolactate synthase 2 small subunit -
  HWV01_RS00260 (HWV01_00260) - 64478..65407 (+) 930 WP_211673572.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 55374.26 Da        Isoelectric Point: 7.9125

>NTDB_id=458255 HWV01_RS00245 WP_211673570.1 60445..61962(-) (comM) [Moritella sp. 5]
MNLAVIYSRAILGINAPLITIEVHISEGLPGFTIVGLPETSVKEAKDRVRSALMNSNFVMPAKRITVNLGPADLPKEGSR
YDLPIAIAILIASQQVTTNRHQQLEFIGELSLSGKLRTCRGTIPSIIAGKKAQRSTIIPFDNGHEAALIDNATCFTAMDL
QQVCTHLTDQQKLPSAQRATAETITSANQHDMQDIIGQQSAKRALEICAAGNHNLLLFGPPGTGKTMLASRLTSIQPDMT
EQEALECAAIKSISGGEFVAQDWCRRPFRTPHHTSSAVALVGGGRNPRPGEITLAHNGVLFLDELPEYQRKALDSLREPL
EAGQITISRANQQVDFPANFQLIGALNPSPSGYYDNNKFGSNNSQVAKYLSKLSGPFLDRFDLTIEVPALPKGSLTEQGQ
RGENSEQIKQRVSAAQIIQRQRSNKLNDALTSKEIEYYCPLQHQDAIFLELAIDKMGLSTRAFHKIIKVARTIADLNNCI
DINKSHLLEALSYRAMDRLLQQINV

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=458255 HWV01_RS00245 WP_211673570.1 60445..61962(-) (comM) [Moritella sp. 5]
ATGAATTTAGCCGTGATCTATAGCCGTGCGATTTTAGGTATCAACGCGCCTTTAATTACCATAGAAGTACACATCAGCGA
AGGACTACCAGGATTTACCATTGTCGGCCTACCAGAAACATCAGTGAAAGAAGCCAAAGATCGCGTGCGAAGCGCCTTAA
TGAATTCTAATTTTGTGATGCCAGCCAAACGGATCACCGTCAACTTGGGACCTGCCGACCTACCAAAAGAAGGCAGCCGT
TATGACTTACCGATTGCTATCGCGATTTTAATCGCATCACAACAAGTCACGACTAATCGACATCAGCAATTAGAATTTAT
TGGTGAACTCTCTTTATCCGGTAAATTACGCACTTGCCGTGGCACAATCCCGAGTATAATCGCGGGTAAAAAAGCCCAAC
GCAGTACTATCATTCCCTTTGATAATGGCCATGAAGCAGCGCTTATCGACAATGCCACTTGTTTCACAGCTATGGATTTA
CAACAGGTATGTACACATTTAACGGATCAACAAAAATTACCCTCCGCACAACGAGCAACAGCCGAAACCATAACATCAGC
AAACCAACACGATATGCAAGACATTATCGGCCAGCAAAGTGCCAAACGAGCCTTAGAGATCTGTGCAGCAGGTAATCATA
ATTTATTGCTGTTTGGTCCTCCCGGGACAGGTAAAACCATGTTGGCCAGTCGCTTAACCAGTATTCAACCTGATATGACT
GAACAAGAAGCTCTCGAATGCGCAGCGATAAAATCCATTAGTGGCGGCGAGTTTGTTGCCCAAGATTGGTGCCGTCGCCC
TTTTCGAACCCCGCACCATACCTCCTCGGCGGTCGCGCTAGTCGGTGGCGGTCGAAACCCGAGACCGGGAGAAATAACTC
TCGCGCATAATGGCGTGTTATTTTTAGACGAACTGCCAGAATACCAGCGTAAAGCACTCGACTCTTTACGCGAACCTCTA
GAAGCAGGACAAATCACAATCTCCCGGGCCAACCAACAAGTCGACTTCCCCGCTAATTTCCAATTAATAGGCGCACTAAA
CCCATCACCTTCAGGCTATTACGACAATAATAAATTTGGTAGCAACAATAGCCAAGTGGCAAAATATTTAAGCAAGTTAT
CAGGACCCTTCTTAGACCGCTTTGATCTGACAATTGAAGTCCCCGCATTACCAAAGGGCAGTTTAACGGAGCAAGGGCAG
CGCGGTGAAAACAGTGAACAAATTAAACAAAGGGTAAGTGCAGCACAAATAATTCAACGACAACGCAGCAATAAATTAAA
CGACGCTTTGACCAGTAAAGAGATTGAATATTATTGCCCACTACAACATCAAGATGCGATATTTTTAGAACTGGCCATTG
ATAAAATGGGTCTATCTACGCGGGCATTTCATAAGATAATCAAGGTCGCTCGTACCATTGCAGATTTAAATAATTGTATA
GATATCAATAAATCCCACCTACTTGAAGCACTCTCCTATCGAGCCATGGACCGCTTATTACAACAAATAAATGTTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

58.052

99.604

0.578
  comM Vibrio cholerae strain A1552

57.624

100

0.576
  comM Glaesserella parasuis strain SC1401

57.312

100

0.574
  comM Haemophilus influenzae Rd KW20

56.805

100

0.57
  comM Legionella pneumophila str. Paris

47.4

99.01

0.469
  comM Legionella pneumophila strain ERS1305867

47.4

99.01

0.469
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.857

100

0.434