Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SA190iCDA_RS22260 Genome accession   NZ_CP056087
Coordinates   4902349..4902843 (-) Length   164 a.a.
NCBI ID   WP_070887133.1    Uniprot ID   -
Organism   Pseudomonas argentinensis strain SA190     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4897349..4907843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA190iCDA_RS22235 - 4898360..4898881 (+) 522 WP_070887138.1 DUF3299 domain-containing protein -
  SA190iCDA_RS22240 - 4899019..4899711 (+) 693 WP_070887137.1 OmpW/AlkL family protein -
  SA190iCDA_RS22245 - 4899894..4900823 (-) 930 WP_070887136.1 NAD-dependent epimerase/dehydratase family protein -
  SA190iCDA_RS22250 - 4900816..4901700 (-) 885 WP_070887135.1 sugar nucleotide-binding protein -
  SA190iCDA_RS22255 - 4901942..4902289 (+) 348 WP_083329869.1 hypothetical protein -
  SA190iCDA_RS22260 ssb 4902349..4902843 (-) 495 WP_070887133.1 single-stranded DNA-binding protein Machinery gene
  SA190iCDA_RS22265 - 4902859..4904247 (-) 1389 WP_070887132.1 MFS transporter -
  SA190iCDA_RS22270 uvrA 4904435..4907290 (+) 2856 WP_070887131.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18316.38 Da        Isoelectric Point: 5.9588

>NTDB_id=458136 SA190iCDA_RS22260 WP_070887133.1 4902349..4902843(-) (ssb) [Pseudomonas argentinensis strain SA190]
MARGVNKVILVGTCGQDPETRYLPSGNAVTNLSLATSEQWTDKQTGQRVEKTEWHRVSLFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGVKRYTTEIIVDMQGTMQLLGGRPDGAGGGEPRQSRPAPQREPQQQAPRQSAPQQQKPQPAQDYDSFDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=458136 SA190iCDA_RS22260 WP_070887133.1 4902349..4902843(-) (ssb) [Pseudomonas argentinensis strain SA190]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGCGGACAGGATCCGGAAACGCGCTATCTGCCCAGCGGCAA
TGCCGTGACCAACCTGAGCCTGGCTACCAGCGAGCAGTGGACGGACAAGCAGACCGGTCAGCGCGTCGAGAAAACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTCGCCGAGATCGCCGGTGAGTACCTGCGCAAGGGCTCCCAGGTCTACATCGAG
GGCAAGCTGCAGACCCGCGAGTGGGAAAAGGACGGCGTGAAGCGCTACACCACCGAGATCATCGTCGACATGCAGGGCAC
CATGCAACTGCTCGGCGGCCGTCCTGACGGCGCTGGTGGTGGTGAGCCGCGTCAGTCGCGCCCGGCACCGCAGCGCGAGC
CGCAGCAGCAGGCGCCCCGCCAGTCCGCGCCGCAGCAGCAGAAGCCGCAGCCGGCCCAGGACTACGACAGCTTCGACGAC
GACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55

100

0.604
  ssb Glaesserella parasuis strain SC1401

46.961

100

0.518
  ssb Neisseria meningitidis MC58

45.455

100

0.488
  ssb Neisseria gonorrhoeae MS11

45.455

100

0.488
  ssb Latilactobacillus sakei subsp. sakei 23K

33.52

100

0.366