Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   SA190iCDA_RS05870 Genome accession   NZ_CP056087
Coordinates   1296623..1297495 (-) Length   290 a.a.
NCBI ID   WP_139159445.1    Uniprot ID   -
Organism   Pseudomonas argentinensis strain SA190     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1291623..1302495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA190iCDA_RS05850 - 1293602..1294900 (-) 1299 WP_070884465.1 NAD(P)/FAD-dependent oxidoreductase -
  SA190iCDA_RS05855 - 1295142..1295669 (-) 528 WP_070884464.1 MOSC domain-containing protein -
  SA190iCDA_RS05860 yacG 1295709..1295909 (-) 201 WP_070884463.1 DNA gyrase inhibitor YacG -
  SA190iCDA_RS05865 coaE 1295906..1296514 (-) 609 WP_070884681.1 dephospho-CoA kinase -
  SA190iCDA_RS05870 pilD 1296623..1297495 (-) 873 WP_139159445.1 prepilin peptidase Machinery gene
  SA190iCDA_RS05875 pilC 1297499..1298722 (-) 1224 WP_070884462.1 type II secretion system F family protein Machinery gene
  SA190iCDA_RS05880 pilB 1298725..1300428 (-) 1704 WP_070884461.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SA190iCDA_RS05885 pilA2 1300672..1301097 (+) 426 WP_083329721.1 pilin Machinery gene

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32078.02 Da        Isoelectric Point: 6.7329

>NTDB_id=458120 SA190iCDA_RS05870 WP_139159445.1 1296623..1297495(-) (pilD) [Pseudomonas argentinensis strain SA190]
MTIYDFLADNTPAFVFCTLIVGLLVGSFLNVVIHRLPKMMLRDWRIQAREVLELPAEPTGETYNLVLPHSSCPHCQHEIR
PWENIPVISYLFLRGKCAGCKATISLRYPLVELSCGLLSAYIAWHFGFGWQAAGMLVLAWGLLAMSLIDADHQLLPDTLV
LPLLWLGLIANNFGLFTSLEDALWGAVAGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSVVG
AVLGVIMLRLRDASTSTPIPFGPYLAIAGFIALLWGKQITEGYLRFAGFN

Nucleotide


Download         Length: 873 bp        

>NTDB_id=458120 SA190iCDA_RS05870 WP_139159445.1 1296623..1297495(-) (pilD) [Pseudomonas argentinensis strain SA190]
ATGACCATATACGACTTCCTGGCCGACAATACGCCGGCCTTCGTTTTCTGCACACTTATCGTCGGCCTGCTGGTCGGCAG
CTTTCTCAATGTGGTCATCCATCGCCTGCCGAAGATGATGCTGCGCGACTGGCGCATCCAGGCGCGGGAAGTACTGGAAT
TACCCGCTGAGCCTACCGGGGAAACCTACAATCTGGTGCTCCCCCATTCCAGCTGTCCCCATTGCCAGCATGAAATCCGC
CCTTGGGAAAATATCCCGGTCATCAGCTATCTGTTTCTGCGCGGCAAATGCGCCGGCTGCAAGGCGACGATCAGCCTGCG
CTATCCGCTGGTCGAGTTGAGCTGCGGCCTGCTCTCGGCCTATATCGCCTGGCATTTCGGCTTTGGCTGGCAAGCGGCAG
GCATGCTGGTGCTGGCCTGGGGCTTGTTGGCGATGAGCCTGATCGATGCCGATCACCAGTTGCTGCCGGACACTCTGGTA
CTGCCGCTGTTGTGGCTGGGCTTGATTGCCAATAACTTCGGGCTCTTTACCAGCCTGGAAGATGCCCTATGGGGCGCTGT
GGCAGGCTACCTGAGCCTGTGGTCGGTCTTCTGGCTGTTCAAGCTGGTAACCGGCAAGGAAGGCATGGGCTATGGCGACT
TCAAGCTGCTCGCCATGCTCGGCGCCTGGGGCGGGTGGCAGATTCTGCCGCTGACCATTCTGCTGTCTTCGGTGGTCGGT
GCCGTGCTCGGGGTGATCATGCTGCGCCTGCGTGATGCGAGCACCAGCACGCCGATTCCGTTTGGCCCGTACCTGGCCAT
TGCAGGCTTTATCGCGCTGCTCTGGGGCAAGCAGATTACCGAAGGTTATCTGCGGTTCGCGGGTTTCAACTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-126)

Type IV leader peptidase family (Peptidase_A24)

(136-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

56.391

91.724

0.517
  pilD Vibrio campbellii strain DS40M4

54.945

94.138

0.517
  pilD Acinetobacter baumannii D1279779

51.056

97.931

0.5
  pilD Acinetobacter nosocomialis M2

50

97.931

0.49
  pilD Neisseria gonorrhoeae MS11

49.618

90.345

0.448