Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SA190iCDA_RS05875 Genome accession   NZ_CP056087
Coordinates   1297499..1298722 (-) Length   407 a.a.
NCBI ID   WP_070884462.1    Uniprot ID   -
Organism   Pseudomonas argentinensis strain SA190     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1292499..1303722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA190iCDA_RS05850 - 1293602..1294900 (-) 1299 WP_070884465.1 NAD(P)/FAD-dependent oxidoreductase -
  SA190iCDA_RS05855 - 1295142..1295669 (-) 528 WP_070884464.1 MOSC domain-containing protein -
  SA190iCDA_RS05860 yacG 1295709..1295909 (-) 201 WP_070884463.1 DNA gyrase inhibitor YacG -
  SA190iCDA_RS05865 coaE 1295906..1296514 (-) 609 WP_070884681.1 dephospho-CoA kinase -
  SA190iCDA_RS05870 pilD 1296623..1297495 (-) 873 WP_139159445.1 prepilin peptidase Machinery gene
  SA190iCDA_RS05875 pilC 1297499..1298722 (-) 1224 WP_070884462.1 type II secretion system F family protein Machinery gene
  SA190iCDA_RS05880 pilB 1298725..1300428 (-) 1704 WP_070884461.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SA190iCDA_RS05885 pilA2 1300672..1301097 (+) 426 WP_083329721.1 pilin Machinery gene
  SA190iCDA_RS05890 - 1301159..1303099 (+) 1941 WP_205881589.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 43743.46 Da        Isoelectric Point: 9.9660

>NTDB_id=458121 SA190iCDA_RS05875 WP_070884462.1 1297499..1298722(-) (pilC) [Pseudomonas argentinensis strain SA190]
MAAAAKAPKTSTFVWEGKDRKGSIVKGELSGQNPALVKAQLRKQGINPTKVRKKGMSLGGAGKKIKPLDIALFARQMATM
MKAGVPLLQSFDIIADGVEKPSMRKLVDELKQHVAAGNSFAAALRTKPQYFDDLFCNLVDAGEQSGALESLLDRVATYKE
KTEALKAKIKKAMNYPIAVIAVAIIVSCILLIKVVPQFKEVFSSFGAELPAFTLFVIGISEGLQEWWFIFLIALIGAGYA
FMQAKQRSEKFRDALDRTILKAPIVGNIVYKAAVARYARTLSTTFAAGVPLVEALDSVAGATGNVVFRNAVAKVKQDVTS
GMQLNFSMRSTNAFPAMAVQMTAIGEESGALDTMLDKVASYYEAEVDNAVDGLTSLMEPLIMSVLGVLVGGLIIAMYLPI
FQLGSVV

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=458121 SA190iCDA_RS05875 WP_070884462.1 1297499..1298722(-) (pilC) [Pseudomonas argentinensis strain SA190]
ATGGCAGCAGCAGCAAAAGCGCCCAAGACCAGCACGTTCGTCTGGGAAGGCAAGGATCGCAAGGGCAGCATCGTCAAGGG
CGAGCTCAGCGGCCAGAACCCGGCTCTGGTCAAGGCGCAGTTGCGCAAACAAGGCATTAATCCAACAAAGGTTCGCAAGA
AAGGCATGAGCCTGGGCGGTGCCGGCAAGAAGATCAAGCCGCTGGATATCGCCCTGTTTGCTCGGCAGATGGCAACCATG
ATGAAAGCAGGCGTGCCCTTGCTGCAGTCGTTCGACATCATTGCCGATGGTGTTGAAAAGCCAAGTATGCGCAAGCTGGT
AGACGAGCTCAAACAGCATGTAGCTGCAGGTAACAGCTTTGCTGCCGCGCTACGCACCAAGCCTCAGTATTTCGACGACC
TGTTCTGCAACCTAGTTGATGCAGGTGAGCAATCCGGCGCACTGGAGAGCCTCCTTGACCGAGTGGCTACATATAAAGAA
AAAACCGAAGCACTCAAGGCCAAGATCAAGAAGGCAATGAACTATCCGATTGCGGTCATTGCAGTCGCAATCATTGTCTC
GTGCATCCTGCTTATCAAAGTAGTGCCGCAGTTCAAAGAAGTCTTTTCCAGCTTTGGCGCCGAGCTACCAGCCTTTACGC
TTTTTGTTATCGGCATATCCGAGGGACTGCAGGAGTGGTGGTTCATTTTCCTGATTGCCCTGATCGGAGCAGGCTACGCA
TTCATGCAGGCCAAACAACGCTCGGAGAAATTCCGTGATGCCCTTGATCGCACCATTCTCAAGGCGCCTATCGTGGGCAA
TATCGTTTACAAGGCTGCAGTAGCGCGTTACGCACGCACCCTATCGACAACCTTCGCCGCAGGCGTACCCCTTGTCGAAG
CACTGGACTCCGTTGCCGGCGCGACCGGCAACGTGGTTTTCCGCAACGCCGTAGCCAAGGTCAAGCAGGATGTCACCAGC
GGCATGCAGCTGAACTTCTCCATGCGCTCCACCAATGCCTTCCCAGCCATGGCCGTACAAATGACCGCTATCGGCGAAGA
GTCCGGCGCCCTGGACACCATGCTCGACAAGGTTGCCAGCTATTACGAGGCAGAAGTGGACAATGCTGTTGACGGCCTCA
CTTCGCTGATGGAACCGCTGATCATGTCGGTACTTGGCGTACTCGTCGGCGGACTGATCATCGCGATGTACCTTCCGATC
TTCCAGCTCGGCTCCGTTGTCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(73-196)

Type II secretion system (T2SS), protein F (T2SSF)

(278-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

77.475

99.263

0.769
  pilC Acinetobacter baylyi ADP1

62.99

100

0.631
  pilC Acinetobacter baumannii D1279779

61.916

100

0.619
  pilC Legionella pneumophila strain ERS1305867

52.854

99.017

0.523
  pilG Neisseria gonorrhoeae MS11

45.522

98.771

0.45
  pilG Neisseria meningitidis 44/76-A

45.522

98.771

0.45
  pilC Vibrio cholerae strain A1552

41.562

97.543

0.405
  pilC Vibrio campbellii strain DS40M4

40.494

99.509

0.403
  pilC Thermus thermophilus HB27

37.065

98.771

0.366