Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HV119_RS24140 Genome accession   NZ_CP055551
Coordinates   5211723..5213243 (+) Length   506 a.a.
NCBI ID   WP_043018960.1    Uniprot ID   -
Organism   Citrobacter freundii strain RHBSTW-00200     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5206723..5218243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV119_RS24120 (HV119_24115) - 5208279..5209208 (-) 930 WP_003829030.1 branched-chain amino acid transaminase -
  HV119_RS24125 (HV119_24120) ilvM 5209226..5209489 (-) 264 WP_003018017.1 acetolactate synthase 2 small subunit -
  HV119_RS24130 (HV119_24125) ilvG 5209486..5211132 (-) 1647 WP_043018961.1 acetolactate synthase 2 catalytic subunit -
  HV119_RS24135 (HV119_24130) ilvL 5211272..5211370 (-) 99 WP_001311244.1 ilv operon leader peptide -
  HV119_RS24140 (HV119_24135) comM 5211723..5213243 (+) 1521 WP_043018960.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HV119_RS24145 (HV119_24140) maoP 5213268..5213606 (-) 339 WP_003018025.1 macrodomain Ori organization protein MaoP -
  HV119_RS24150 (HV119_24145) hdfR 5213713..5214558 (+) 846 WP_087050451.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54991.98 Da        Isoelectric Point: 7.2884

>NTDB_id=457760 HV119_RS24140 WP_043018960.1 5211723..5213243(+) (comM) [Citrobacter freundii strain RHBSTW-00200]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTAHNLDTYELVGELALTGALRGVPGAISSATEAIRAGRRIIVAKENAAEVGLIHGEGCLIAEHL
QTVCAFLEGKHDLDKPSSADFTPNALVDDLSDVIGQEQGKRGLELTAAGGHNLLLIGPPGTGKTMLASRLRGLLPPLSND
EALESAAILSLVNSDTIQKQWKQRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQSAVKG
EDSATVKQRVMAARERQYQRQNKLNAHLGSQDIHKYCVLRSDDAQWLEETLAHLGLSIRAWLRLIKVARTIADIEQCDHI
SRQHLQEAVGYRAIDRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=457760 HV119_RS24140 WP_043018960.1 5211723..5213243(+) (comM) [Citrobacter freundii strain RHBSTW-00200]
ATGTCACTATCGATTGTTCACACACGCGCCGCGCTGGGCGTGAATGCGCCAGCCATTACTATCGAGGTGCATATCAGCAA
CGGATTGCCTGGCTTAACCATGGTGGGGCTACCCGAAACGACGGTGAAAGAGGCACGCGACCGGGTACGTAGTGCGATTA
TAAATAGCGGTTATGAATTCCCGGCGAAGAAAATAACCATAAACCTCGCTCCGGCCGATCTCCCGAAAGAAGGGGGGAGA
TATGATTTACCTATCGCTGTTGCGCTTCTGGCCGCTTCTGAGCAGCTTACAGCCCACAATCTCGATACCTACGAGCTGGT
AGGGGAATTAGCGCTTACAGGCGCATTACGCGGCGTTCCCGGCGCGATATCAAGTGCAACCGAAGCCATTCGTGCAGGCA
GGCGAATTATTGTCGCCAAAGAGAACGCCGCTGAAGTTGGACTCATACATGGCGAAGGATGCCTGATCGCCGAACACCTG
CAGACCGTATGCGCATTTCTTGAAGGTAAGCACGATTTAGATAAGCCCTCATCCGCAGATTTTACGCCCAACGCATTAGT
CGATGATCTGAGCGATGTTATTGGCCAGGAACAGGGTAAACGGGGGCTGGAGCTTACCGCAGCTGGCGGTCACAACCTCT
TGCTTATCGGCCCGCCGGGCACAGGCAAGACCATGCTCGCCAGCCGCCTCAGAGGGCTGCTCCCGCCACTTAGCAATGAT
GAAGCACTGGAAAGCGCCGCGATACTCAGTCTGGTTAATTCAGACACAATACAAAAACAGTGGAAGCAACGCCCTTTTCG
TTCGCCGCATCACAGTGCTTCATTGACCGCGATGGTCGGTGGAGGCTCAATTCCTGCGCCAGGCGAAATCTCTCTGGCGC
ATAACGGCATACTGTTTCTGGATGAACTACCCGAGTTTGAGCGACGCACGCTGGATGCGCTGCGCGAACCCATCGAGTCC
GGGCAGATCCATCTCTCCCGCACCAGAGCAAAAATAACCTACCCCGCGCGCTTTCAACTCATAGCTGCGATGAATCCAAG
CCCGACAGGCCATTATCAGGGAAACCATAACCGCTGTACCCCGGAACAGACGCTGCGTTACCTCAATCGATTGTCAGGTC
CATTTCTTGACCGCTTCGATCTCTCCCTCGAAATTCCCTTACCACCGCCTGGCATACTCAGCCAGAGCGCAGTAAAAGGG
GAAGATAGCGCCACGGTGAAGCAACGCGTTATGGCAGCACGAGAGCGTCAGTATCAGCGGCAAAATAAGTTAAACGCGCA
TCTGGGTAGTCAGGATATCCATAAATACTGCGTACTGCGCAGCGACGATGCGCAGTGGCTTGAAGAAACGCTCGCACATC
TCGGATTGTCTATCCGCGCCTGGCTGCGCCTGATAAAGGTCGCACGAACAATTGCGGATATCGAACAATGTGATCACATC
TCTCGCCAACACTTACAGGAAGCCGTTGGGTACCGGGCGATAGACAGATTACTCATTCATTTGCAGAAACTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.121

100

0.587
  comM Vibrio cholerae strain A1552

58.566

99.209

0.581
  comM Glaesserella parasuis strain SC1401

57.564

100

0.579
  comM Vibrio campbellii strain DS40M4

57.738

99.605

0.575
  comM Legionella pneumophila str. Paris

47.284

98.221

0.464
  comM Legionella pneumophila strain ERS1305867

47.284

98.221

0.464
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.452

99.605

0.433