Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HV559_RS09615 Genome accession   NZ_CP055306
Coordinates   1987026..1987547 (+) Length   173 a.a.
NCBI ID   WP_176810248.1    Uniprot ID   A0A7D5DZ68
Organism   Mannheimia pernigra strain BNO311     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1982026..1992547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV559_RS09600 (HV559_09600) - 1982102..1982899 (-) 798 WP_176808825.1 ABC transporter ATP-binding protein -
  HV559_RS09605 (HV559_09605) - 1982901..1983833 (-) 933 WP_176810246.1 ABC transporter permease -
  HV559_RS09610 (HV559_09610) uvrA 1984041..1986869 (-) 2829 WP_176810247.1 excinuclease ABC subunit UvrA -
  HV559_RS09615 (HV559_09615) ssb 1987026..1987547 (+) 522 WP_176810248.1 single-stranded DNA-binding protein Machinery gene
  HV559_RS09620 (HV559_09620) - 1987786..1989135 (-) 1350 WP_176810249.1 GntP family permease -
  HV559_RS09625 (HV559_09625) - 1989323..1989838 (+) 516 WP_159629158.1 gluconokinase -
  HV559_RS09630 (HV559_09630) gntR 1989887..1990882 (-) 996 WP_176810250.1 gluconate operon transcriptional repressor GntR -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19349.09 Da        Isoelectric Point: 5.2533

>NTDB_id=457533 HV559_RS09615 WP_176810248.1 1987026..1987547(+) (ssb) [Mannheimia pernigra strain BNO311]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQAEVCGQYLRKGSQVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLGSRQGNDINNQPQSGWGNSAPAGNSYNQGNSNYSYSQTSNSAQPQSKPAPQA
EPAMNNFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=457533 HV559_RS09615 WP_176810248.1 1987026..1987547(+) (ssb) [Mannheimia pernigra strain BNO311]
ATGGCTGGTATCAATAAAGTAATTATCGTAGGTAATTTAGGTAACGACCCAGAAATGCGTACAATGCCAAATGGAGAAGC
GGTAGCAAATATTAGTGTAGCAACATCTGAAAGCTGGACGGATAAAAATACAGGCGAACGTCGAGAGGTTACTGAATGGC
ATCGTATTGTATTTTATCGTCGCCAAGCAGAAGTATGTGGGCAATATCTACGTAAAGGTTCACAAGTTTATGTGGAAGGT
CGTTTAAGAACCCGTAAATGGCAAGACCAAAACGGACAAGATCGTTACACCACTGAAATTCAAGGTGATGTATTACAAAT
GCTCGGTAGCCGCCAAGGTAATGATATTAACAACCAACCACAAAGCGGTTGGGGTAATTCAGCACCTGCAGGAAATAGTT
ATAATCAAGGTAATAGCAATTATAGCTATAGCCAAACTTCAAACTCAGCACAACCACAATCTAAACCTGCTCCACAAGCT
GAACCTGCAATGAACAATTTTGATGATGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D5DZ68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

72.928

100

0.763
  ssb Vibrio cholerae strain A1552

53.977

100

0.549
  ssb Neisseria meningitidis MC58

46.857

100

0.474
  ssb Neisseria gonorrhoeae MS11

46.857

100

0.474
  ssb Latilactobacillus sakei subsp. sakei 23K

35.714

100

0.376