Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HV560_RS09575 Genome accession   NZ_CP055305
Coordinates   2002220..2002741 (+) Length   173 a.a.
NCBI ID   WP_176812739.1    Uniprot ID   -
Organism   Mannheimia pernigra strain 17CN0883     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1997220..2007741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV560_RS09560 (HV560_09560) - 1997296..1998093 (-) 798 WP_176812737.1 ABC transporter ATP-binding protein -
  HV560_RS09565 (HV560_09565) - 1998095..1999027 (-) 933 WP_176812738.1 ABC transporter permease -
  HV560_RS09570 (HV560_09570) uvrA 1999235..2002063 (-) 2829 WP_176812862.1 excinuclease ABC subunit UvrA -
  HV560_RS09575 (HV560_09575) ssb 2002220..2002741 (+) 522 WP_176812739.1 single-stranded DNA-binding protein Machinery gene
  HV560_RS09580 (HV560_09580) - 2003121..2004470 (-) 1350 WP_176812740.1 GntP family permease -
  HV560_RS09585 (HV560_09585) - 2004658..2005173 (+) 516 WP_176812741.1 gluconokinase -
  HV560_RS09590 (HV560_09590) gntR 2005222..2006217 (-) 996 WP_176810250.1 gluconate operon transcriptional repressor GntR -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19339.11 Da        Isoelectric Point: 5.2533

>NTDB_id=457510 HV560_RS09575 WP_176812739.1 2002220..2002741(+) (ssb) [Mannheimia pernigra strain 17CN0883]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQAEVCGQYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLGSRQGNDMNNQPQSGWGNSAPAGNSYNQGNSNYSYSQTSNSAQPQSKPAPQA
EPAMNNFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=457510 HV560_RS09575 WP_176812739.1 2002220..2002741(+) (ssb) [Mannheimia pernigra strain 17CN0883]
ATGGCTGGTATCAATAAAGTAATTATCGTAGGTAATTTAGGTAACGACCCAGAAATGCGTACAATGCCAAATGGCGAAGC
GGTAGCAAATATTAGTGTAGCTACATCTGAAAGCTGGACGGATAAAAATACAGGCGAACGTCGAGAGGTTACTGAATGGC
ATCGTATTGTATTTTATCGTCGCCAAGCAGAAGTATGTGGGCAATATCTACGTAAAGGTTCACAAGTTTATGTGGAAGGT
CGTTTAAAAACCCGTAAATGGCAAGACCAAAACGGACAAGATCGTTACACCACTGAAATTCAAGGTGATGTGTTACAAAT
GCTCGGTAGCCGCCAAGGTAATGATATGAACAACCAACCACAAAGCGGTTGGGGTAATTCAGCACCTGCAGGAAATAGTT
ATAATCAAGGTAATAGCAATTATAGCTATAGCCAAACTTCAAACTCAGCACAACCACAATCTAAACCTGCTCCACAAGCT
GAACCTGCAATGAACAATTTTGATGATGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

73.481

100

0.769
  ssb Vibrio cholerae strain A1552

53.977

100

0.549
  ssb Neisseria meningitidis MC58

46.857

100

0.474
  ssb Neisseria gonorrhoeae MS11

46.857

100

0.474
  ssb Latilactobacillus sakei subsp. sakei 23K

35.714

100

0.376