Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HUK62_RS02395 Genome accession   NZ_CP055277
Coordinates   531985..533472 (-) Length   495 a.a.
NCBI ID   WP_176536995.1    Uniprot ID   A0A7H8SD19
Organism   Acinetobacter sp. NEB 394     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 526985..538472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUK62_RS02370 (HUK62_02370) - 527074..527478 (+) 405 WP_005401007.1 MAPEG family protein -
  HUK62_RS02375 (HUK62_02375) ppa 527598..528125 (+) 528 WP_058868713.1 inorganic diphosphatase -
  HUK62_RS02380 (HUK62_02380) - 528228..529553 (-) 1326 WP_010325681.1 OprD family outer membrane porin -
  HUK62_RS02385 (HUK62_02385) - 530014..530784 (+) 771 WP_176536993.1 TorF family putative porin -
  HUK62_RS02390 (HUK62_02390) - 531133..531876 (+) 744 WP_176536994.1 TorF family putative porin -
  HUK62_RS02395 (HUK62_02395) comM 531985..533472 (-) 1488 WP_176536995.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HUK62_RS02400 (HUK62_02400) - 533538..533765 (-) 228 WP_004692854.1 accessory factor UbiK family protein -
  HUK62_RS02405 (HUK62_02405) glnK 534041..534379 (+) 339 WP_004281042.1 P-II family nitrogen regulator -
  HUK62_RS02410 (HUK62_02410) - 534439..535833 (+) 1395 WP_058868720.1 ammonium transporter -
  HUK62_RS02415 (HUK62_02415) nrdR 535985..536443 (+) 459 WP_004692852.1 transcriptional regulator NrdR -
  HUK62_RS02420 (HUK62_02420) ribD 536458..537561 (+) 1104 WP_176536996.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54383.26 Da        Isoelectric Point: 8.0112

>NTDB_id=457363 HUK62_RS02395 WP_176536995.1 531985..533472(-) (comM) [Acinetobacter sp. NEB 394]
MSFAKIYTRALLGLHAPSVEVEVHLSQGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDSSR
LDLPIALGILIASGQLPEQGTENFEFIGELALDGQLRPISGTLSIAIACQQAGHQLILPEANAQEASQLPNFQVFAAQHL
KQVCEHLSQNHLIQQFQPTALKASQHYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNT
QENLEVASIYSVANHQHPFGQRPFRAPHHTASAVALVGGGSQPKPGEITLAHKGVLFLDELPEFDRKVLEVLRQPIEAKE
IVISRASRQITFPANFQLIAAMNPCPCGYAFNQDSRCQCSAEAIKRYQNRISGPLLDRIDLHIDVPPLHASELQDTQVVE
DSATVRERVIQAYQWQMQRQACLNMALSPKQLEQFAPLDGQAALIFEKAQQRLNLSARGYHRILRVARTIADLAQSEQIQ
TGHLTEALSYRGQHH

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=457363 HUK62_RS02395 WP_176536995.1 531985..533472(-) (comM) [Acinetobacter sp. NEB 394]
ATGTCTTTTGCCAAAATTTACACTCGAGCTTTGCTCGGTTTACACGCACCTTCGGTTGAAGTTGAAGTTCATCTGAGCCA
AGGACTACCCTCTTTAACCATTGTGGGGCTTCCTGAAGCAGCCGTTCGGGAAAGCAAAGATCGGGTGCGCTCCGCCATTA
TCAATAGTGGCTTTCAGTTTCCGACCAAACGCCTCACCATCAACCTTGCGCCCGCAGACCTGCCCAAAGACAGCTCACGA
CTGGATTTGCCTATTGCACTGGGTATTTTAATTGCCTCTGGTCAGCTCCCTGAGCAAGGAACTGAAAATTTTGAATTTAT
AGGTGAGTTGGCACTTGATGGGCAACTGCGACCAATTTCAGGTACTTTAAGTATTGCAATTGCCTGCCAGCAAGCTGGAC
ATCAACTGATTTTACCGGAGGCCAATGCGCAAGAAGCCTCTCAACTGCCCAACTTTCAGGTGTTTGCAGCGCAACATTTA
AAACAAGTCTGTGAGCATCTGTCGCAAAACCATCTCATCCAACAGTTTCAACCCACGGCGCTAAAAGCCTCACAGCACTA
CAAATTTGATTTGGCCGATGTTAAAGGTCAACTGCGTCCAAGACGCGCCTTAGAGATTGCGGCAGCAGGTGGTCATTCTT
TACTGTTTAAAGGACCGCCAGGGACAGGGAAAACCCTATTGGCTTCACGTTTAGCCAGTATTCTCCCACCCTTGAACACG
CAAGAGAATTTGGAAGTGGCGAGTATTTACTCGGTGGCCAATCATCAACATCCTTTTGGACAGCGGCCATTTCGTGCACC
GCACCATACAGCTTCTGCGGTTGCCTTAGTCGGTGGCGGGTCACAACCCAAACCCGGTGAAATTACTTTGGCACATAAAG
GCGTGCTGTTTTTAGATGAACTACCAGAGTTTGACCGCAAGGTGTTGGAGGTTTTAAGACAGCCGATTGAAGCCAAAGAG
ATTGTGATTTCGCGTGCTTCACGGCAGATCACCTTTCCAGCCAATTTCCAACTGATTGCCGCAATGAATCCGTGTCCCTG
TGGTTATGCTTTTAATCAAGATAGCCGTTGTCAGTGCTCAGCCGAGGCGATTAAACGCTACCAAAACCGCATTTCAGGGC
CGTTACTGGATCGGATTGATTTACATATTGATGTACCACCCTTGCATGCATCTGAATTGCAGGACACACAAGTCGTAGAA
GACTCGGCAACTGTACGTGAGCGCGTGATTCAAGCTTATCAATGGCAAATGCAGCGCCAAGCTTGTCTCAATATGGCTTT
ATCACCCAAACAACTCGAACAATTCGCACCGCTAGATGGACAAGCGGCTTTAATCTTTGAAAAAGCACAACAGCGTTTAA
ATTTGTCTGCTCGGGGGTATCACCGTATTTTAAGAGTGGCCAGAACCATTGCCGACTTAGCGCAGTCTGAACAGATTCAA
ACAGGCCACTTAACCGAAGCCCTGTCTTATCGTGGGCAACATCACTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8SD19

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.703

100

0.521
  comM Glaesserella parasuis strain SC1401

51.102

100

0.515
  comM Vibrio cholerae strain A1552

51.107

100

0.513
  comM Vibrio campbellii strain DS40M4

51.313

100

0.513
  comM Legionella pneumophila str. Paris

50.4

100

0.509
  comM Legionella pneumophila strain ERS1305867

50.4

100

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.743

100

0.467