Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JJB20_RS16565 Genome accession   NZ_CP067232
Coordinates   3505599..3507026 (-) Length   475 a.a.
NCBI ID   WP_000980608.1    Uniprot ID   -
Organism   Escherichia coli strain SBF45     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3500599..3512026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJB20_RS16535 (JJB20_16535) yeeZ 3500654..3501478 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  JJB20_RS16540 (JJB20_16540) yeeY 3501524..3502453 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  JJB20_RS16545 (JJB20_16545) yoeI 3502668..3502730 (+) 63 WP_010723108.1 membrane protein YoeI -
  JJB20_RS16550 (JJB20_16550) plaP 3502720..3504078 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  JJB20_RS16555 (JJB20_16555) tsuA 3504257..3505315 (+) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  JJB20_RS16560 (JJB20_16560) tsuB 3505329..3505556 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  JJB20_RS16565 (JJB20_16565) sbcB 3505599..3507026 (-) 1428 WP_000980608.1 exodeoxyribonuclease I Machinery gene
  JJB20_RS16570 (JJB20_16570) dacD 3507235..3508401 (+) 1167 WP_039264491.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  JJB20_RS16575 (JJB20_16575) sbmC 3508520..3508993 (+) 474 WP_001105410.1 DNA gyrase inhibitor SbmC -
  JJB20_RS16580 (JJB20_16580) yeeA 3509191..3510249 (+) 1059 WP_001200891.1 FUSC family protein -
  JJB20_RS16585 (JJB20_16585) tmaR 3510421..3510750 (+) 330 WP_000450409.1 DUF496 family protein -
  JJB20_RS16590 (JJB20_16590) - 3510851..3511042 (-) 192 Protein_3257 EutP/PduV family microcompartment system protein -
  JJB20_RS16595 (JJB20_16595) cobU 3511209..3511754 (+) 546 WP_000973159.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54457.75 Da        Isoelectric Point: 5.6070

>NTDB_id=457182 JJB20_RS16565 WP_000980608.1 3505599..3507026(-) (sbcB) [Escherichia coli strain SBF45]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=457182 JJB20_RS16565 WP_000980608.1 3505599..3507026(-) (sbcB) [Escherichia coli strain SBF45]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCACTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGACGTTATGCGTGCCTGTTATGCCCTGCGCCCTGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCAGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGCG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAATTTTTACAAGGTTATGCAGATGAATTACAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581