Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HLB43_RS03570 Genome accession   NZ_CP055224
Coordinates   810578..811141 (-) Length   187 a.a.
NCBI ID   WP_011095190.1    Uniprot ID   -
Organism   Pectobacterium atrosepticum strain Green1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 805578..816141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLB43_RS03550 (HLB43_03550) - 806571..807002 (+) 432 WP_039293554.1 GNAT family N-acetyltransferase -
  HLB43_RS03555 (HLB43_03555) - 807143..807574 (+) 432 WP_011095193.1 carboxymuconolactone decarboxylase family protein -
  HLB43_RS03560 (HLB43_03560) - 807826..808284 (-) 459 WP_039295248.1 GNAT family N-acetyltransferase -
  HLB43_RS03565 (HLB43_03565) - 808476..810332 (-) 1857 WP_039293548.1 amidohydrolase -
  HLB43_RS03570 (HLB43_03570) ssb 810578..811141 (-) 564 WP_011095190.1 single-stranded DNA-binding protein Machinery gene
  HLB43_RS03575 (HLB43_03575) uvrA 811387..814221 (+) 2835 WP_215216099.1 excinuclease ABC subunit UvrA -
  HLB43_RS03580 (HLB43_03580) - 814239..814658 (+) 420 WP_011095188.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HLB43_RS03585 (HLB43_03585) vapB 815495..815722 (+) 228 WP_011095187.1 type II toxin-antitoxin system VapB family antitoxin -
  HLB43_RS03590 (HLB43_03590) - 815719..816135 (+) 417 WP_039310134.1 type II toxin-antitoxin system VapC family toxin -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 19726.69 Da        Isoelectric Point: 5.2456

>NTDB_id=456894 HLB43_RS03570 WP_011095190.1 810578..811141(-) (ssb) [Pectobacterium atrosepticum strain Green1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGGNAGGGQPQGGWGQPQQPQGGNQFSGGAQAQQRPA
QNASSSQNNAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=456894 HLB43_RS03570 WP_011095190.1 810578..811141(-) (ssb) [Pectobacterium atrosepticum strain Green1]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCAGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AATGGCACCGTGTGGTTCTGTTTGGCAAGCTGGCAGAAGTCGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTCGTTAACGTCGG
CGGCACCATGCAGATGCTAGGTGGACGTCAGGGCGGCGGCGCACCAGCAGGCGGTGGCAATGCAGGTGGCGGTCAGCCAC
AAGGCGGCTGGGGTCAACCTCAGCAACCGCAGGGCGGAAACCAGTTCAGCGGCGGCGCACAAGCTCAGCAGCGCCCAGCT
CAGAACGCATCTTCCTCACAAAATAATGCCCCGGCACAAAGCAACGAACCACCAATGGATTTCGACGACGATATTCCTTT
CTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.429

100

0.722
  ssb Glaesserella parasuis strain SC1401

55.208

100

0.567
  ssb Neisseria meningitidis MC58

44.974

100

0.455
  ssb Neisseria gonorrhoeae MS11

44.974

100

0.455
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.158

97.861

0.364